InterPro Scan Result: AT1G29940.1

SEQUENCE: AT1G29940.1 CRC64: 9660FCAEF8FD6086 LENGTH: 1178 aa
InterPro
IPR007120
Domain
DNA-directed RNA polymerase, subunit 2, domain 6
G3DSA:2.40.270.10[888-1036]T 5.9e-52 G3DSA:2.40.270.10 no descriptionno description
PF00562[686-1058]T 1.8e-109 PF00562 RNA_pol_Rpb2_6RNA_pol_Rpb2_6
InterPro
IPR007121
Conserved_site
RNA polymerase, beta subunit, conserved site
PS01166[896-908]T NA PS01166 RNA_POL_BETARNA_POL_BETA
InterPro
IPR007641
Domain
RNA polymerase Rpb2, domain 7
PF04560[1060-1169]T 1.2e-20 PF04560 RNA_pol_Rpb2_7RNA_pol_Rpb2_7
InterPro
IPR007642
Domain
RNA polymerase Rpb2, domain 2
PF04561[193-371]T 1.3e-10 PF04561 RNA_pol_Rpb2_2RNA_pol_Rpb2_2
InterPro
IPR007644
Domain
RNA polymerase, beta subunit, protrusion
PF04563[21-422]T 3e-24 PF04563 RNA_pol_Rpb2_1RNA_pol_Rpb2_1
InterPro
IPR007645
Domain
RNA polymerase Rpb2, domain 3
PF04565[459-523]T 1.4e-21 PF04565 RNA_pol_Rpb2_3RNA_pol_Rpb2_3
InterPro
IPR009674
Domain
RNA polymerase I, Rpa2 specific
PF06883[576-633]T 1.5e-19 PF06883 RNA_pol_Rpa2_4RNA_pol_Rpa2_4
InterPro
IPR015712
Family
DNA-directed RNA polymerase, subunit 2
PTHR20856[14-1176]T 0 PTHR20856 FAMILY NOT NAMEDFAMILY NOT NAMED
noIPR
unintegrated
unintegrated
G3DSA:3.90.1100.10[682-757]T 9.4e-60 G3DSA:3.90.1100.10 no descriptionno description
PTHR20856:SF5[14-1176]T 0 PTHR20856:SF5 DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
seg[461-472]? NA seg seg[1053-1063]? NA seg segseg
SSF64484[14-1176]T 6.3e-301 SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerasebeta and beta-prime subunits of DNA dependent RNA-polymerase
SEQUENCE: AT1G29940.1 CRC64: 9660FCAEF8FD6086 LENGTH: 1178 aa
InterPro
IPR007120
Domain
DNA-directed RNA polymerase, subunit 2, domain 6
GENE3DG3DSA:2.40.270.10no description
 5.9e-52 [888-1036]T    
PFAMPF00562RNA_pol_Rpb2_6
 1.8e-109 [686-1058]T    
Parentno parent
Childrenno children
Found inIPR010243IPR015712IPR019969
ContainsIPR007121IPR014724
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Biological Process: transcription (GO:0006350)
InterPro
IPR007121
Conserved_site
RNA polymerase, beta subunit, conserved site
PROSITEPS01166RNA_POL_BETA
 NA [896-908]T    
Parentno parent
Childrenno children
Found inIPR007120IPR010243IPR015712IPR019969
Containsno entries
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Biological Process: transcription (GO:0006350)
InterPro
IPR007641
Domain
RNA polymerase Rpb2, domain 7
PFAMPF04560RNA_pol_Rpb2_7
 1.2e-20 [1060-1169]T    
Parentno parent
Childrenno children
Found inIPR010243IPR015712IPR019969
Containsno entries
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Biological Process: transcription (GO:0006350)
InterPro
IPR007642
Domain
RNA polymerase Rpb2, domain 2
PFAMPF04561RNA_pol_Rpb2_2
 1.3e-10 [193-371]T    
Parentno parent
Childrenno children
Found inIPR007644IPR010243
Containsno entries
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Biological Process: transcription (GO:0006350)
InterPro
IPR007644
Domain
RNA polymerase, beta subunit, protrusion
PFAMPF04563RNA_pol_Rpb2_1
 3e-24 [21-422]T    
Parentno parent
Childrenno children
Found inIPR010243
ContainsIPR007642
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Biological Process: transcription (GO:0006350)
InterPro
IPR007645
Domain
RNA polymerase Rpb2, domain 3
PFAMPF04565RNA_pol_Rpb2_3
 1.4e-21 [459-523]T    
Parentno parent
Childrenno children
Found inIPR010243IPR015712
Containsno entries
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Biological Process: transcription (GO:0006350)
InterPro
IPR009674
Domain
RNA polymerase I, Rpa2 specific
PFAMPF06883RNA_pol_Rpa2_4
 1.5e-19 [576-633]T    
Parentno parent
Childrenno children
Found inIPR015712
Containsno entries
GO termsMolecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Cellular Component: nucleus (GO:0005634)
Biological Process: transcription (GO:0006350)
InterPro
IPR015712
Family
DNA-directed RNA polymerase, subunit 2
PANTHERPTHR20856FAMILY NOT NAMED
 0 [14-1176]T    
Parentno parent
ChildrenIPR010243
Found inno entries
ContainsIPR007120IPR007121IPR007641IPR007645IPR007646IPR007647IPR009674IPR014724IPR019462
GO termsMolecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Biological Process: transcription (GO:0006350)
Molecular Function: ribonucleoside binding (GO:0032549)
noIPR
unintegrated
unintegrated
GENE3DG3DSA:3.90.1100.10no description
 9.4e-60 [682-757]T    
PANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
 0 [14-1176]T    
SEGsegseg
 NA [461-472]?  NA [1053-1063]?   
SUPERFAMILYSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerase
 6.3e-301 [14-1176]T    
Parentno parent
Childrenno children
Found inno entries
Containsno entries
GO termsnone