InterPro Scan Result: AT2G16940.2

SEQUENCE: AT2G16940.2 CRC64: E20A33CDE590C3F6 LENGTH: 610 aa
InterPro
IPR000504
Domain
RNA recognition motif domain
PF00076[241-301]T 7.1e-10 PF00076 RRM_1[336-405]T 9.7e-20 PF00076 RRM_1RRM_1
SM00360[232-304]T 4.2e-16 SM00360 no description[335-407]T 4e-24 SM00360 no description[515-593]T 2e-07 SM00360 no descriptionno description
PS50102[231-308]T 15.033 PS50102 RRM[334-411]T 19.348 PS50102 RRM[514-597]T 9.661 PS50102 RRMRRM
InterPro
IPR003954
Domain
RNA recognition motif domain, eukaryote
SM00361[335-407]T 13 SM00361 no description[520-593]T 0.0002 SM00361 no descriptionno description
InterPro
IPR006509
Family
Splicing factor, CC1-like
TIGR01622[71-607]T 4.4e-192 TIGR01622 SF-CC1: splicing factor, CC1-like familySF-CC1: splicing factor, CC1-like family
InterPro
IPR012677
Domain
Nucleotide-binding, alpha-beta plait
G3DSA:3.30.70.330[222-309]T 9.7e-17 G3DSA:3.30.70.330 no description[332-410]T 2.4e-22 G3DSA:3.30.70.330 no description[515-595]T 3.6e-15 G3DSA:3.30.70.330 no descriptionno description
noIPR
unintegrated
unintegrated
PTHR24622[12-557]T 4.9e-83 PTHR24622 FAMILY NOT NAMEDFAMILY NOT NAMED
PTHR24622:SF230[12-557]T 4.9e-83 PTHR24622:SF230 OS03G0153000 PROTEINOS03G0153000 PROTEIN
seg[29-43]? NA seg seg[45-143]? NA seg seg[155-161]? NA seg seg[257-275]? NA seg seg[318-324]? NA seg seg[419-435]? NA seg seg[452-465]? NA seg seg[591-602]? NA seg segseg
SSF54928[106-311]T 7.9e-22 SSF54928 RNA-binding domain, RBD[333-604]T 1.4e-29 SSF54928 RNA-binding domain, RBDRNA-binding domain, RBD
SEQUENCE: AT2G16940.2 CRC64: E20A33CDE590C3F6 LENGTH: 610 aa
InterPro
IPR000504
Domain
RNA recognition motif domain
PFAMPF00076RRM_1
 7.1e-10 [241-301]T  9.7e-20 [336-405]T   
SMARTSM00360no description
 4.2e-16 [232-304]T  4e-24 [335-407]T  2e-07 [515-593]T  
PROFILEPS50102RRM
 19.348 [334-411]T  15.033 [231-308]T  9.661 [514-597]T  
Parentno parent
ChildrenIPR003954
Found inIPR002343IPR002344IPR006509IPR006515IPR006529IPR006532IPR006535IPR006536IPR006546IPR006548IPR008111IPR009145IPR011400IPR012677IPR016304IPR016967IPR017111IPR017325IPR017334IPR017347
Containsno entries
GO termsMolecular Function: nucleic acid binding (GO:0003676)
InterPro
IPR003954
Domain
RNA recognition motif domain, eukaryote
SMARTSM00361no description
 13 [335-407]T  0.0002 [520-593]T   
ParentIPR000504
Childrenno children
Found inno entries
Containsno entries
GO termsMolecular Function: nucleic acid binding (GO:0003676)
InterPro
IPR006509
Family
Splicing factor, CC1-like
TIGRFAMsTIGR01622SF-CC1: splicing factor, CC1-like family
 4.4e-192 [71-607]T    
Parentno parent
Childrenno children
Found inno entries
ContainsIPR000504IPR012677
GO termsMolecular Function: RNA binding (GO:0003723)
Cellular Component: nucleus (GO:0005634)
Biological Process: mRNA processing (GO:0006397)
InterPro
IPR012677
Domain
Nucleotide-binding, alpha-beta plait
GENE3DG3DSA:3.30.70.330no description
 9.7e-17 [222-309]T  2.4e-22 [332-410]T  3.6e-15 [515-595]T  
Parentno parent
ChildrenIPR012678IPR014789IPR015245
Found inIPR000427IPR005120IPR006509IPR009021IPR013025IPR016304IPR016967IPR017325IPR017334IPR017347IPR019985
ContainsIPR000504IPR001014IPR014886IPR018098
GO termsMolecular Function: nucleotide binding (GO:0000166)
noIPR
unintegrated
unintegrated
PANTHERPTHR24622FAMILY NOT NAMED
 4.9e-83 [12-557]T    
PANTHERPTHR24622:SF230OS03G0153000 PROTEIN
 4.9e-83 [12-557]T    
SEGsegseg
 NA [29-43]?  NA [45-143]?  NA [155-161]?  NA [257-275]? 
 NA [318-324]?  NA [419-435]?  NA [452-465]?  NA [591-602]? 
SUPERFAMILYSSF54928RNA-binding domain, RBD
 1.4e-29 [333-604]T  7.9e-22 [106-311]T   
Parentno parent
Childrenno children
Found inno entries
Containsno entries
GO termsnone