InterPro Scan Result: AT2G16940.3

SEQUENCE: AT2G16940.3 CRC64: DE3B0E46762291FD LENGTH: 599 aa
InterPro
IPR000504
Domain
RNA recognition motif domain
PF00076[221-290]T 0.00015 PF00076 RRM_1[325-394]T 9.4e-20 PF00076 RRM_1RRM_1
SM00360[212-293]T 1.1e-08 SM00360 no description[324-396]T 4e-24 SM00360 no description[504-582]T 2e-07 SM00360 no descriptionno description
PS50102[211-297]T 11.776 PS50102 RRM[323-400]T 19.348 PS50102 RRM[503-586]T 9.661 PS50102 RRMRRM
InterPro
IPR003954
Domain
RNA recognition motif domain, eukaryote
SM00361[324-396]T 13 SM00361 no description[509-582]T 0.0002 SM00361 no descriptionno description
InterPro
IPR006509
Family
Splicing factor, CC1-like
TIGR01622[71-596]T 1.3e-193 TIGR01622 SF-CC1: splicing factor, CC1-like familySF-CC1: splicing factor, CC1-like family
InterPro
IPR012677
Domain
Nucleotide-binding, alpha-beta plait
G3DSA:3.30.70.330[194-293]T 4.7e-13 G3DSA:3.30.70.330 no description[321-399]T 2.3e-22 G3DSA:3.30.70.330 no description[504-584]T 3.5e-15 G3DSA:3.30.70.330 no descriptionno description
noIPR
unintegrated
unintegrated
PTHR24622[12-546]T 2.6e-82 PTHR24622 FAMILY NOT NAMEDFAMILY NOT NAMED
PTHR24622:SF230[12-546]T 2.6e-82 PTHR24622:SF230 OS03G0153000 PROTEINOS03G0153000 PROTEIN
seg[29-43]? NA seg seg[45-143]? NA seg seg[155-161]? NA seg seg[246-264]? NA seg seg[307-313]? NA seg seg[408-424]? NA seg seg[441-454]? NA seg seg[580-591]? NA seg segseg
SSF54928[99-300]T 1e-17 SSF54928 RNA-binding domain, RBD[322-593]T 1.4e-29 SSF54928 RNA-binding domain, RBDRNA-binding domain, RBD
SEQUENCE: AT2G16940.3 CRC64: DE3B0E46762291FD LENGTH: 599 aa
InterPro
IPR000504
Domain
RNA recognition motif domain
PFAMPF00076RRM_1
 0.00015 [221-290]T  9.4e-20 [325-394]T   
SMARTSM00360no description
 1.1e-08 [212-293]T  4e-24 [324-396]T  2e-07 [504-582]T  
PROFILEPS50102RRM
 19.348 [323-400]T  11.776 [211-297]T  9.661 [503-586]T  
Parentno parent
ChildrenIPR003954
Found inIPR002343IPR002344IPR006509IPR006515IPR006529IPR006532IPR006535IPR006536IPR006546IPR006548IPR008111IPR009145IPR011400IPR012677IPR016304IPR016967IPR017111IPR017325IPR017334IPR017347
Containsno entries
GO termsMolecular Function: nucleic acid binding (GO:0003676)
InterPro
IPR003954
Domain
RNA recognition motif domain, eukaryote
SMARTSM00361no description
 13 [324-396]T  0.0002 [509-582]T   
ParentIPR000504
Childrenno children
Found inno entries
Containsno entries
GO termsMolecular Function: nucleic acid binding (GO:0003676)
InterPro
IPR006509
Family
Splicing factor, CC1-like
TIGRFAMsTIGR01622SF-CC1: splicing factor, CC1-like family
 1.3e-193 [71-596]T    
Parentno parent
Childrenno children
Found inno entries
ContainsIPR000504IPR012677
GO termsMolecular Function: RNA binding (GO:0003723)
Cellular Component: nucleus (GO:0005634)
Biological Process: mRNA processing (GO:0006397)
InterPro
IPR012677
Domain
Nucleotide-binding, alpha-beta plait
GENE3DG3DSA:3.30.70.330no description
 4.7e-13 [194-293]T  2.3e-22 [321-399]T  3.5e-15 [504-584]T  
Parentno parent
ChildrenIPR012678IPR014789IPR015245
Found inIPR000427IPR005120IPR006509IPR009021IPR013025IPR016304IPR016967IPR017325IPR017334IPR017347IPR019985
ContainsIPR000504IPR001014IPR014886IPR018098
GO termsMolecular Function: nucleotide binding (GO:0000166)
noIPR
unintegrated
unintegrated
PANTHERPTHR24622FAMILY NOT NAMED
 2.6e-82 [12-546]T    
PANTHERPTHR24622:SF230OS03G0153000 PROTEIN
 2.6e-82 [12-546]T    
SEGsegseg
 NA [29-43]?  NA [45-143]?  NA [155-161]?  NA [246-264]? 
 NA [307-313]?  NA [408-424]?  NA [441-454]?  NA [580-591]? 
SUPERFAMILYSSF54928RNA-binding domain, RBD
 1.4e-29 [322-593]T  1e-17 [99-300]T   
Parentno parent
Childrenno children
Found inno entries
Containsno entries
GO termsnone