InterPro Scan Result: AT2G36990.1

SEQUENCE: AT2G36990.1 CRC64: DA75EC67B4542CB6 LENGTH: 547 aa
InterPro
IPR000943
Domain
RNA polymerase sigma-70 factor
PR00046[335-348]T 5.100010023582436E-23 PR00046 SIGMA70FCT[359-367]T 5.100010023582436E-23 PR00046 SIGMA70FCT[483-495]T 5.100010023582436E-23 PR00046 SIGMA70FCT[504-519]T 5.100010023582436E-23 PR00046 SIGMA70FCT[519-530]T 5.100010023582436E-23 PR00046 SIGMA70FCTSIGMA70FCT
PS00715[335-348]T 0.0 PS00715 SIGMA70_1SIGMA70_1
PS00716[504-530]T 0.0 PS00716 SIGMA70_2SIGMA70_2
InterPro
IPR007624
Domain
RNA polymerase sigma-70 region 3
PF04539[391-466]T 2.4999999999999964E-15 PF04539 Sigma70_r3Sigma70_r3
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PF04542[311-380]T 1.9999999999999992E-16 PF04542 Sigma70_r2Sigma70_r2
InterPro
IPR007630
Domain
RNA polymerase sigma-70 region 4
PF04545[479-532]T 5.100000000000007E-15 PF04545 Sigma70_r4Sigma70_r4
InterPro
IPR011991
Domain
Winged helix-turn-helix transcription repressor DNA-binding
G3DSA:1.10.10.10[264-293]T 4.800000000000009E-13 G3DSA:1.10.10.10 Wing_hlx_DNA_bd[381-429]T 4.800000000000009E-13 G3DSA:1.10.10.10 Wing_hlx_DNA_bd[474-543]T 7.299999999999985E-23 G3DSA:1.10.10.10 Wing_hlx_DNA_bdWing_hlx_DNA_bd
InterPro
IPR013324
Domain
RNA polymerase sigma factor, region 3/4
SSF88659[384-458]T 7.499996058514449E-13 SSF88659 Sigma_r3_r4[441-545]T 2.700001835807941E-24 SSF88659 Sigma_r3_r4Sigma_r3_r4
InterPro
IPR013325
Domain
RNA polymerase sigma factor, region 2
SSF88946[232-381]T 4.399990012377245E-47 SSF88946 Sigma_r2Sigma_r2
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGR02937[306-534]T 7.100014433131474E-29 TIGR02937 sigma70-ECFsigma70-ECF
InterPro
IPR016262
Family
RNA polymerase sigma factor, SigB/SigC/SigD, plastid
PIRSF000767[1-547]T 0.0 PIRSF000767 RNA_pol_sigma_SigB/C/DRNA_pol_sigma_SigB/C/D
noIPR
unintegrated
unintegrated
G3DSA:1.10.601.10[192-263]T 3.099999999999981E-46 G3DSA:1.10.601.10 G3DSA:1.10.601.10[301-380]T 3.099999999999981E-46 G3DSA:1.10.601.10 G3DSA:1.10.601.10G3DSA:1.10.601.10
SEQUENCE: AT2G36990.1 CRC64: DA75EC67B4542CB6 LENGTH: 547 aa
InterPro
IPR000943
Domain
RNA polymerase sigma-70 factor
PRINTSPR00046SIGMA70FCT
 5.100010023582436E-23 [335-348]T  5.100010023582436E-23 [359-367]T  5.100010023582436E-23 [483-495]T  5.100010023582436E-23 [504-519]T 
 5.100010023582436E-23 [519-530]T    
PROSITEPS00715SIGMA70_1
 0.0 [335-348]T    
PROSITEPS00716SIGMA70_2
 0.0 [504-530]T    
ParentIPR014284
ChildrenIPR012760
Found inIPR012759IPR012761IPR012845IPR014200IPR014209IPR014218IPR014322IPR016262IPR016263IPR016371IPR017848
ContainsIPR007624IPR007627IPR007630IPR011991IPR013324IPR013325
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sigma factor activity (GO:0016987)
InterPro
IPR007624
Domain
RNA polymerase sigma-70 region 3
PFAMPF04539Sigma70_r3
 2.4999999999999964E-15 [391-466]T    
Parentno parent
Childrenno children
Found inIPR000943IPR011991IPR012760IPR012761IPR012845IPR013324IPR014212IPR014236IPR014284IPR014288IPR014322IPR016262IPR017848
Containsno entries
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sigma factor activity (GO:0016987)
InterPro
IPR007627
Domain
RNA polymerase sigma-70 region 2
PFAMPF04542Sigma70_r2
 1.9999999999999992E-16 [311-380]T    
Parentno parent
Childrenno children
Found inIPR000943IPR012759IPR012760IPR012761IPR012845IPR013325IPR014200IPR014209IPR014212IPR014218IPR014236IPR014244IPR014284IPR014286IPR014288IPR014289IPR014293IPR014296IPR014298IPR014300IPR014303IPR014304IPR014305IPR014322IPR014325IPR014326IPR014327IPR014331IPR016262IPR016263IPR016371IPR017848
ContainsIPR000838
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sigma factor activity (GO:0016987)
InterPro
IPR007630
Domain
RNA polymerase sigma-70 region 4
PFAMPF04545Sigma70_r4
 5.100000000000007E-15 [479-532]T    
Parentno parent
Childrenno children
Found inIPR000943IPR011991IPR012759IPR012760IPR012761IPR012845IPR013324IPR014200IPR014209IPR014212IPR014236IPR014284IPR014288IPR014300IPR014322IPR016262IPR016263IPR017848
Containsno entries
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sigma factor activity (GO:0016987)
InterPro
IPR011991
Domain
Winged helix-turn-helix transcription repressor DNA-binding
GENE3DG3DSA:1.10.10.10Wing_hlx_DNA_bd
 4.800000000000009E-13 [264-293]T  4.800000000000009E-13 [381-429]T  7.299999999999985E-23 [474-543]T  
Parentno parent
ChildrenIPR000232IPR000418IPR000485IPR000524IPR000591IPR000607IPR000847IPR001346IPR001523IPR001766IPR003150IPR003316IPR004409IPR005104IPR005561IPR005818IPR006199IPR006630IPR008823IPR009718IPR014048IPR014793IPR015191IPR015198IPR015265IPR016032IPR019559IPR020900IPR022687
Found inIPR000525IPR000717IPR000835IPR000943IPR001367IPR001669IPR001845IPR002571IPR002717IPR002831IPR002853IPR003196IPR003314IPR003432IPR004085IPR004605IPR005149IPR005234IPR005650IPR005819IPR006200IPR006291IPR007394IPR008339IPR008340IPR008341IPR008342IPR008851IPR009374IPR010166IPR010906IPR011879IPR012015IPR012712IPR012759IPR012760IPR012761IPR012845IPR012967IPR014071IPR014075IPR014091IPR014200IPR014209IPR014212IPR014218IPR014236IPR014277IPR014284IPR014288IPR014322IPR014646IPR014892IPR015210IPR016262IPR016263IPR016371IPR016461IPR016481IPR016640IPR016656IPR016723IPR016943IPR016998IPR017206IPR017799IPR017848IPR019888IPR019941IPR020890IPR022689
ContainsIPR001497IPR001808IPR001867IPR007624IPR007630IPR013196IPR013324IPR014786IPR015189IPR016157IPR017919IPR018122IPR018334IPR018335IPR019817IPR019885
GO termsnone
InterPro
IPR013324
Domain
RNA polymerase sigma factor, region 3/4
SUPERFAMILYSSF88659Sigma_r3_r4
 7.499996058514449E-13 [384-458]T  2.700001835807941E-24 [441-545]T   
Parentno parent
ChildrenIPR013249
Found inIPR000943IPR007394IPR011517IPR011991IPR012759IPR012760IPR012761IPR012845IPR014200IPR014209IPR014212IPR014236IPR014284IPR014288IPR014294IPR014300IPR014305IPR014322IPR016262IPR017848
ContainsIPR007624IPR007630
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sigma factor activity (GO:0016987)
InterPro
IPR013325
Domain
RNA polymerase sigma factor, region 2
SUPERFAMILYSSF88946Sigma_r2
 4.399990012377245E-47 [232-381]T    
Parentno parent
Childrenno children
Found inIPR000943IPR011517IPR012759IPR012761IPR012845IPR014200IPR014209IPR014212IPR014218IPR014236IPR014244IPR014284IPR014286IPR014288IPR014289IPR014293IPR014294IPR014296IPR014298IPR014300IPR014303IPR014304IPR014305IPR014322IPR014325IPR014326IPR014327IPR014331IPR016262IPR016263IPR016371IPR017848
ContainsIPR000838IPR007627IPR007631IPR009042
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sigma factor activity (GO:0016987)
InterPro
IPR014284
Domain
RNA polymerase sigma-70
TIGRFAMsTIGR02937sigma70-ECF
 7.100014433131474E-29 [306-534]T    
Parentno parent
ChildrenIPR000943
Found inIPR011517IPR011745IPR014244IPR014286IPR014289IPR014293IPR014294IPR014296IPR014298IPR014300IPR014303IPR014304IPR014305IPR014325IPR014326IPR014327IPR014331IPR017622
ContainsIPR000838IPR007624IPR007627IPR007630IPR011991IPR013324IPR013325
GO termsMolecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sigma factor activity (GO:0016987)
InterPro
IPR016262
Family
RNA polymerase sigma factor, SigB/SigC/SigD, plastid
PIRPIRSF000767RNA_pol_sigma_SigB/C/D
 0.0 [1-547]T    
Parentno parent
Childrenno children
Found inno entries
ContainsIPR000943IPR007624IPR007627IPR007630IPR009042IPR011991IPR013324IPR013325
GO termsnone
noIPR
unintegrated
unintegrated
GENE3DG3DSA:1.10.601.10G3DSA:1.10.601.10
 3.099999999999981E-46 [192-263]T  3.099999999999981E-46 [301-380]T   
Parentno parent
Childrenno children
Found inno entries
Containsno entries
GO termsnone