InterPro Scan Result: RAFL04-18-H05

SEQUENCE: RAFL04-18-H05_3_ORF2 CRC64: DF2943119FC404B2 LENGTH: 239 aa
InterPro
IPR000783
Domain
RNA polymerase, subunit H/Rpb5 C-terminal
PD005155[173-238]T 1e-31 PD005155 O81098_ARATH_O81098;O81098_ARATH_O81098;
G3DSA:3.90.940.20[167-239]T 2.7e-28 G3DSA:3.90.940.20 no descriptionno description
PF01191[166-239]T 4e-38 PF01191 RNA_pol_Rpb5_CRNA_pol_Rpb5_C
SSF55287[168-239]T 9.9e-32 SSF55287 RPB5-like RNA polymerase subunitRPB5-like RNA polymerase subunit
InterPro
IPR005571
Domain
RNA polymerase, Rpb5, N-terminal
G3DSA:3.40.1340.10[37-166]T 1.8e-41 G3DSA:3.40.1340.10 no descriptionno description
PF03871[36-124]T 1.3e-27 PF03871 RNA_pol_Rpb5_NRNA_pol_Rpb5_N
SSF53036[37-167]T 2e-40 SSF53036 Eukaryotic RPB5 N-terminal domainEukaryotic RPB5 N-terminal domain
InterPro
IPR014381
Family
DNA-directed RNA polymerase, RPB5 subunit
PIRSF000747[25-239]T 8.5e-137 PIRSF000747 DNA-directed RNA polymerase, RPB5 subunitDNA-directed RNA polymerase, RPB5 subunit
InterPro
IPR020608
Conserved_site
RNA polymerase, subunit H/Rpb5, conserved site
PS01110[171-184]T NA PS01110 RNA_POL_H_23KDRNA_POL_H_23KD
noIPR
unintegrated
unintegrated
PTHR10535[36-239]T 7.5e-97 PTHR10535 DNA-DIRECTED RNA POLYMERASE IIDNA-DIRECTED RNA POLYMERASE II
seg[4-15]? NA seg segseg
SEQUENCE: RAFL04-18-H05_5_ORF1 CRC64: 9E31DA7682A0D1D6 LENGTH: 56 aa
No hits reported.
SEQUENCE: RAFL04-18-H05_5_ORF2 CRC64: 7DC09F7286BE25C4 LENGTH: 53 aa
No hits reported.
SEQUENCE: RAFL04-18-H05_5_ORF3 CRC64: 784A3C081B716CFD LENGTH: 52 aa
No hits reported.
SEQUENCE: RAFL04-18-H05_5_ORF4 CRC64: A1247AE879831857 LENGTH: 70 aa
No hits reported.
SEQUENCE: RAFL04-18-H05_6_ORF2 CRC64: 58FB2F486C56988A LENGTH: 75 aa
No hits reported.
SEQUENCE: RAFL04-18-H05_6_ORF3 CRC64: 16A419F53B618AE2 LENGTH: 69 aa
noIPR
unintegrated
unintegrated
seg[17-41]? NA seg segseg
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