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11-0002-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1146600 [Map]; Strand: w
      • AT1G04280.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0002-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATACTA ACTCAACACA ACATTGATTT CTAGTTTGGA 
    TTTTTCTTTT CTCATCTAAT ATGTCTGAAT TTTTCTTGGA AGATTTCTCT 
    TAAGAATGCA TCTAGTGGGA TTTATTTAAT GTTTATTATA TAGTACTACT 
    AGCTACTACT AGATATTAAT ATTATATGAA ATTTGATATC ATGCATGATG 
    TGGTAATTTA ATGATGACTT GACTTATTGC GGATGGGGTG GTTTTTCAAA 
    GTATGATTGC CAAAATGACT AGTGATTTAA TTGTTTATCT ATGCATAATG 
    TAATTCATCG TCTAATAGAT ACAGTAATAA CATAAACTAA CAAAAAAAGA 
    TCAAAAGTAT GAAACCAACA TATCTCAACT AATATTCTTT TTCGACAAAA 
    CTGATCACAT CACCTGCGNC ATTNNCCTTT GNNCAGNNTN CTATTCCCCT 
    NNNNTTNNGA ANNAANGGNN NTATNCTNGN NGNGGCTNNN NTNNNNGANN 
    AAAGNNNNNN ANNANNNNNN NGGNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1146541 [Map]; Strand: w
      • AT1G04280.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0002-1 - 3-prime edge 
    CTTACCCTCG CAGTCTCAAT CTCCTTCCCA AAAAGACTTT TCAAACCAAA 
    GAATGGTGAA ACCCTTAGGA GGTAATGGTC TTCCTCTCTG CATCTCTCTC 
    TTCGTTTACC AGTAAACAAA CAACAAAAAC GTATTTGAAA TAATAAATAC 
    TATTGTTTTT TATTTCTTTT TCTCTCTCTC TCTCTCTCTC TTATNGAGTT 
    NTGNNGATTT CTTTGCTATA GAAGGAACAA GAGATGTCTC TANTGTNGGN 
    TGTAAATCAG TTGATCTCCT CCTAGCTTCT CTNGGNGGTC TTGCCGCCGC 
    ANTAGCAGCT GCTTACGCCG GAGAATTACT CCTTCGACGC CGGAAACTTG 
    ATCANGGNGC TTCCATGGGG TATAAAGATG TCAAAATCGC CCCTTTGATN 
    GAGAGGAAAG ACTCAGGTCG ACGATCAAAC CTAGAGAGAT TCTCCCACTA 
    TGTGGGGNAA GTATTCTTAT ATCCTTTCGA CGCCNCCCAA NANTGAACAN 
    GGCTAATAGT TTTATTTACA AAAAAAAGGA NTGCNCACAA TTTAGAGGTA 
    NAGNAAGATA GAAANATAGT NAAGATGCGA CCAGGGAGTT ANAATAACAT 
    NAGAANATAN TTAGAGTCTT TTTTAGGCGG ACCGNAAAAA AAGANAGAGG 
    TNCTTNTNTN TNGGGGNTTA TNTNCAAAAA AANATAACNA ATTTGNNTGG 
    GGAAACCGNT TNNGNNTTGG GGGNANAAAA AGANTCNCGA GNGGG

AT1G04280.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06750.2); Has 195 Blast hits to 194 proteins in 47 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 3; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR