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11-0057-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1350331 [Map]; Strand: w
      • AT1G04810.1 - [+] show detail - 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0057-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA GTTAAACTTA CTGGCAATGC TCAACGAACC 
    CCATCCTTCC TTGAAACTTC ACGCTCTCTC ATATCTCATC AGATTGGTTG 
    ACCAATTTTG GCCCGAGATC TCCACTAGTG TCCCAATCAT GTATTCAATT 
    CTCTCTTCTC TTTTTTTTAA TTGTTTCCCT TCGTGAGGCT ATTCTGTTTG 
    CTTACTGGGA GTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1350333 [Map]; Strand: w
      • AT1G04810.1 - [+] show detail - 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0057-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAAC 
    CCACCGGCGG AACTAACCAT GGCGGCGGCC ATTATCCTAA TCGGAAAATT 
    AGAAACCTAG AGGTGGAGAA GAAGAGTTGA TCAGACGGAG GAACACAAGA 
    ACCGAACTAC TTTGGGCGAG CACAATTTCT GAGTTCACTT TTTCACAAGT 
    CTAATCAAAA TCGAAATTCT AGACTTATCG AATATTAAGA TACTTACCCA 
    ACAAGTCAAG TAATTTTTAC CAATACCCCT AAATGTTTAA TAAGATTACA 
    CTTTCACCCC AAATATATAT GATGGATC

AT1G04810.1

Model type
Protein coding
Short Description
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
Computational Description
26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (TAIR:AT2G32730.1); Has 1171 Blast hits to 1071 proteins in 297 species: Archae - 14; Bacteria - 33; Metazoa - 390; Fungi - 382; Plants - 143; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link
InterPro Scan - TAIR