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11-0104-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13339372 [Map]; Strand: w
      • AT2G31280.1 - [+] show detail - conserved peptide upstream open reading frame 7
        Distance: 0; Region: exon1 (5UTR)
      • AT2G31280.3 - [+] show detail - conserved peptide upstream open reading frame 7
        Distance: 0; Region: exon1 (5UTR)
      • AT2G31280.4 - [+] show detail - conserved peptide upstream open reading frame 7
        Distance: 0; Region: exon1 (5UTR)
      • AT2G31280.2 - [+] show detail - conserved peptide upstream open reading frame 7
        Distance: -58; Region: promoter
    Flanking Genome Sequence: 11-0104-1 - 5-prime edge 
    GTTGCAGCAG ATCTATCTCT GTTTCAAATT CTGATTCTCT CGGTGTTTTT 
    TGTTTGAGCT AGGGCTAAAT TAGTTTCCTT CTTGGGTTTT TATTCGTAAT 
    CCGATTCAAA GTTTGTATCT TTGGGAGGGA TGGGTAAGAG GCAAATATCA 
    CAAGATGAAG TAGGTCCGCC CATAAAACCA AGAGCTGGTT TACGAAGGGA 
    ACAAGCTGGA AGAGGTTCTT ACAGAGGTAG TTAGTTACTT TGTATCTCAT 
    CGAAAACGAA TCAAAAGAAG CT

AT2G31280.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 7
Computational Description
conserved peptide upstream open reading frame 7 (CPUORF7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G06150.2); Has 440 Blast hits to 368 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31280.2

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 7
Computational Description
conserved peptide upstream open reading frame 7 (CPUORF7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G06150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31280.3

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 7
Computational Description
conserved peptide upstream open reading frame 7 (CPUORF7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G06150.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31280.4

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 7
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF7 represents a conserved upstream opening reading frame relative to major ORF AT2G31280.1
Computational Description
conserved peptide upstream open reading frame 7 (CPUORF7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 8 (TAIR:AT1G06149.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR