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11-0119-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29449630 [Map]; Strand: c
      • AT1G78260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: intron5 (CDS)
      • AT1G78260.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 11-0119-1 - 5-prime edge 
    ATCAAATATA TGTTTCTTTT TCGAGTTTAA GACAGCAAAA CGGATAGATC 
    ACGTGCATGA ATGATCAATG CAATCACACG TGGTGATGAA CGGTGTCGTT 
    TGAATAAGAG GGACAACAAA TATTATAGAG ATAAAACACN TGAACTATGT 
    AAGTTGTTAG GAATTTTAAC TCAAAACTAT TTATATTAAG AGATTTGATG 
    ATTTCTGTCT ATTGCATTAG ATTACATTTT ATTTTAGATG TGAGATTTCT 
    AAAAAACGTA TTTTCGATAA GGTGGTTCTT CTAGTCATCA TGAGATGATA 
    CTTTTTGGAT CAAGAACACA CTCTATTTGG ATTAACAATC TAGGGTTATG 
    ATATCGTGAT CAATGAATGC ACTTTTTAAA AAAATATATA GAGGTTTTGA 
    TATCATGTTA AGTTATATGG GTTTCTAAAT TAAAACTAAT TAGTATGAGT 
    AGACAACTAG AAATATATCC AAAGAAATAT GAAAAAAAAG GAATTTATTA 
    AGTACGTACC GGTGGAAGAA GATAGTACTC CTTGGAGAGG AGGGGCAAAA 
    GAGGAATTGG ATGGGTAAAC GAGGAAAGAA GGAGAAGAAA ACCGTTGATG 
    ATGATGTTGT TGAGGATTAT ATGGTTGAGG AANATGATGA TGGNGTTGGN 
    NTGGNNCTCT AGGAGC

AT1G78260.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22330.1); Has 19754 Blast hits to 15639 proteins in 805 species: Archae - 2; Bacteria - 1288; Metazoa - 9939; Fungi - 2340; Plants - 4423; Viruses - 0; Other Eukaryotes - 1762 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78260.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR