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Mutant Lines
11-0127-1

11-0127-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 300100 [Map]; Strand: w
  - AT1G01830.1 - [+] show detail - ARM repeat superfamily protein
    Distance: 0; Region: exon2 (CDS)
  - AT1G01830.2 - [+] show detail - ARM repeat superfamily protein
    Distance: 0; Region: exon3 (CDS)
  - AT1G01830.3 - [+] show detail - ARM repeat superfamily protein
    Distance: 0; Region: exon5 (CDS)
Flanking Genome Sequence: 11-0127-1 - 3-prime edge
```
CTAAGACGCT TAGTGAAGTG ATAGAGCTTG CAGAGCAGTG TTCAACTGAC 
AAGTATGAAG GGAAGCTACG TATGCAGAGC GATCTAGATT CTTTATCCGG 
AAAACTGGAT TTGAATCTAA GAGACTGTGG GGTTTTGATC AAGACCGGCG 
TTCTCGGTGA AGCTACGTTA CCTCTTTACA TTTCAAGTTC ATCGGAAACA 
CCCAAAATTT CCAGTTTAAA AGAACTTCTA GCGAGGCTAC AGATC
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 248390 [Map]; Strand: c
- AT1G01680.1 - [+] show detail - plant U-box 54
  Distance: -23; Region: promoter
- AT1G01690.1 - [+] show detail - putative recombination initiation defects 3
  Distance: -751; Region: promoter

GGGNAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
CCATCCTACT TTCATTTCTA ATAGTTCCAT AACTCCATAC CTTTGCTCAC 
AAAAAAAAGA AAGAAAGCCA GAGTAAGAAA CCATGGAAGA CGCCATATAT 
GTTGCAGTGA ATCAAGATGT TCGAGAAAGT AAAAAAACTT TGTTATGGGC 
TTTGAAAAAT CTTCAAGTCA AGAAGATTTT CCTTCTTCAT GTTCATCTTC 
CATTTTCGTT GACCACTTCT TGTAAGTCTT TTTCTTTTGT TGGTACATTC 
TCTACGTTAA CTTTTGCAAA TTTTGTTTTG TTGGGGCTGC CGGGGATACT 
TTCATAAGGG GAAGTAGCTT GTTTATGGAC GATTCAATTA TATATAACTT 
GTCACGTTGA TCGGACGAAA TAATCAATTT ATTTAATAAT TCTTATATTT 
ACTTGAATT

AT1G01680.1

Model type: Protein coding
Short Description: plant U-box 54
Computational Description: plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01690.1

Model type: Protein coding
Short Description: putative recombination initiation defects 3
Curator Summary: Encodes a novel plant-specific protein that is involved in meiotic double strand break formation.
Computational Description: putative recombination initiation defects 3 (PRD3); Has 279 Blast hits to 273 proteins in 87 species: Archae - 2; Bacteria - 106; Metazoa - 105; Fungi - 5; Plants - 32; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01830.1

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Computational Description: ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01830.2

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Computational Description: ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01830.3

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Computational Description: ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 3429 Blast hits to 2144 proteins in 215 species: Archae - 2; Bacteria - 14; Metazoa - 502; Fungi - 465; Plants - 2072; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).
Link: InterPro Scan - TAIR