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11-0154-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19675503 [Map]; Strand: c
      • AT2G48110.1 - [+] show detail - reduced epidermal fluorescence 4
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 11-0154-1 - 5-prime edge 
    GTTAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCCNG AGGACAGAAA GTAATACACA AAGAAAAGTG 
    TCGGTGCGGG GCACAGGACC CTCGATTGGA TCTCTTTCCT TCAAATTACA 
    ACATATATTT GTCAGTAGAC TTAAAGAAGT ATGTGACTCA GAAATTTAAA 
    ATATTCATAA CGCTCGACGT TCTCATAATA TGACCTTCTA ATTATGAATC 
    ATGCATAAGT TTATATGTGC AACAGAAGTG GGTGCCTCAC ACATGTTAGT 
    ACTTACTTCA GATAATATTT CCAACATATG CATGAAAAAG CAATAACGCA 
    GACATAGATT CTCCTAAAAG CACCAAGACC AGAACAACCT ACCCTACCGC 
    TAAGAGCTTA AAATTCTTAG TATTGTCGGA ATAGATACCT ACCCTTTGCA 
    CAAGGCGTAA GGCTGCTAAC CATAGAGCTA GAAAGGCATC ATGCCATGAT 
    GTACTATTAG CTGCTTGCAA TGCTTTTACA AGACCTGCAA TTGTTTGCTT 
    GTGTTGAAAA TAAAGCCCAT AATAATAAAT ATGTAGATGA GTACGAGAGA 
    AGAAATGCAC GAACGAAAAA TAGAGATAAA TCTTCTAACC GGTTAGATTT 
    TCAACAGCGC TAGCTGCTGC AGCTTGTGTC CCATCCATTA TGTCTTCGAA 
    GAAAAGATCA ATGGGCAACC AAAGTGCANA ATCACTGGTC AATGCTAACT 
    TANAACCAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19675508 [Map]; Strand: c
      • AT2G48110.1 - [+] show detail - reduced epidermal fluorescence 4
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 11-0154-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    CCACTTGCAG TTGCCAATAT TATCGAAGAA GAAGAAAGTC AGTGGATTGA 
    TCAAACTTCG TCTAGTCCAA GCAACCAGTG GAAAGAGAAA AAAGGAAAAT 
    GTCGACAAGG ATTAATTAAT AGCTTACAAC AACTTGGTGA TTATGAAAGC 
    T

AT2G48110.1

Model type
Protein coding
Short Description
reduced epidermal fluorescence 4
Curator Summary
Encodes a novel protein of unknown function with homologs in non-seed plants. Sequence analysis predicts membrane spanning domains and a putative protein-protein interaction domain. Semi-dominant mutations display defects in phenylpropanoid accumulation suggesting a role in phenylpropanoid metabolism.
Computational Description
REDUCED EPIDERMAL FLUORESCENCE 4 (REF4); BEST Arabidopsis thaliana protein match is: REF4-related 1 (TAIR:AT3G23590.1); Has 140 Blast hits to 138 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR