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11-0189-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7333002 [Map]; Strand: c
      • AT5G22110.1 - [+] show detail - DNA polymerase epsilon subunit B2
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-0189-1 - 5-prime edge 
    GANAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCTCTTC ACAGAGAATA CTATAATTTT GGCAGAAGGC 
    GAAATGCAGG TTAACGGTAT CTTTCAGGTA ATTAGAATTG AAGGTGGCAA 
    TTTTGGGCCT TTCTCTCCCC CATTCTGAGT TAATTACNTT TTTAACTAGG 
    GAGATATTTG TATAATTTGC TGAGGTGCAC ATTCATAGAT TTTACGATTT 
    TGTTTTATTT TTCATGTTGG GGTCAAGATA TTAGGCTATT AGCTATATGA 
    AGGATCATAG AACTAAGTCA TGTATAGGGT CCTTTCTGTG ACAAAACATA 
    CGTACACCTG TCTCCAATAA ACACTTGATC AGATTGCCTG TAACAAAGCT 
    CAGTTTTTCA TAATATGTTC TTTGACCAAC TCATCCTCTT CTAAAAGTGT 
    ATTCTCATCT TGTGGTGAAG GTGATTACAT GTGGATTTCC TCCCTTAGAA 
    GACAGGGACA AAACACTAAA GGCGCATTCT GAATATGATT TCTTCGGAGG 
    CGGCACACTA ACTAAAGAAG AGATGGTAAT CTTTGATTCG TTGTTTGTAC 
    TCGGATTGAG AATTTTGTAA ATTTTCAATG CAATCCCTTA CATAGTAGGT 
    AAACCACACT AAAAATAATG TGTTTTTTGC CTGCCAACAG ATTAAACTTG 
    CAGACCTTGA AAGACAAGCG GTGAATGACA CATTTGTCAT ATTGTCTGAC 
    ATATGGTTGG ACGACNAANA GGTGAGTTGG TGTACCAAGT ACTCTATTTA 
    NCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1029470 [Map]; Strand: w
      • AT4G02320.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -3352; Region: intergenic
      • AT4G02325.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 212; Region: intergenic
    Flanking Genome Sequence: 11-0189-1 - 3-prime edge 
    CTTTGGTNGA AACATANNTA NATACTTTCA ACTAACGCAT NNGACTTCAT 
    TGAGAGAAAA AGTAGACTGA AAAAAAGAAC TCCACGTGGT AGGATTGAAT 
    TCGATTCTTA TTTGCAGGTT CTAGCAGTCA AATCGATAAT AAACTCATTT 
    ACTAAATGGA GTTTAACCCG TAATTCTAAA AACAAGTACT ATATAAGTAA 
    CGTTAATGAA AAAGAATTGC GCCATACTTT GAGTTTAGCG TGAAAACATT 
    TCGCCCAAAA AAGAAAGTGA CAGGTACAAA AATGTAATGA AAATGGAGAA 
    AGACGGCATG CATAATGCAT TCTCTTACGG TCTTACCTTT TTCACTTGTC 
    ACAACTTGTA TGCCGACATA ATTATAGACA GACCAAACGT TGCGCATTAT 
    GGGTAGCATT GAAATTCCAT ATGAAGAAAC GTATTTTTTT TTCTTTTTTT 
    GCTAACATTC NAAAAAAATN TTCACGTTCA CGTANCANNA ANTTCAANCA 
    NTGATNGAAA AAAAAATTNT NTTGNTTAAA AAAAGTCCNT CANTNTCGTT 
    NTAAAATNGA TTTTTTTTNG TGGATCATAA TNAACCCTAT TTTTANCCAT 
    AACTTACCCN CANAGNCTTN AAACGGTNGG CNTGCTTNNA AAAAAATTTT 
    GGGNNAAAGT TCGGGACCTT TTTACNATTT TTTTTNANTA TAAANTGGNG 
    GCTAAANCNT NTTTTTTNTA NNGTNNAAAN TCCTAANAAC NATGTCCCAT 
    NAAATTTTGT ATTNGGGGGG NCCCNCGTGT GTTTCNANTG GNTTTNAANC 
    CCGGGGG

AT4G02320.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02300.1); Has 2764 Blast hits to 2709 proteins in 322 species: Archae - 6; Bacteria - 570; Metazoa - 1; Fungi - 200; Plants - 1958; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02325.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G22110.1

Model type
Protein coding
Short Description
DNA polymerase epsilon subunit B2
Curator Summary
Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.
Computational Description
DNA polymerase epsilon subunit B2 (DPB2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, DNA-dependent DNA replication; LOCATED IN: epsilon DNA polymerase complex, nucleus; EXPRESSED IN: embryo, male gametophyte, apical meristem, female gametophyte; CONTAINS InterPro DOMAIN/s: DNA polymerase epsilon, subunit B (InterPro:IPR016266), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 412 Blast hits to 394 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 144; Plants - 62; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR