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11-0238-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18135374 [Map]; Strand: c
      • AT1G49015.1 - [+] show detail - DPP6 N-terminal domain-like protein
        Distance: 62; Region: intergenic
      • AT1G49020.1 - [+] show detail - pre-tRNA
        Distance: 224; Region: intergenic
    Flanking Genome Sequence: 11-0238-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG GTCACTCCTC GTCTGGTCGT ATATCTTGTC 
    AAGAGCTTGC TCATGCTCAT GACTGTATAC CTACTACCTA CTACATCTCA 
    AGCT

AT1G49015.1

Model type
Protein coding
Short Description
DPP6 N-terminal domain-like protein
Computational Description
DPP6 N-terminal domain-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3B-2 (TAIR:AT5G25780.1); Has 427 Blast hits to 427 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 167; Plants - 63; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49020.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asp (anticodon: GTC)
Link
InterPro Scan - TAIR