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11-0244-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30147903 [Map]; Strand: c
      • AT1G80140.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron5 (CDS)
      • AT1G80150.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -485; Region: promoter
    Flanking Genome Sequence: 11-0244-1 - 3-prime edge 
    GTTGTGCCCC TACATGCGTT GAGACTGTGA GAACCTTTTT CTTTCTATCT 
    TTCAAGTTAA TATTAAATGT AAATGAGCTA ATGTTTTAAT GTAATGTATC 
    AGATGAAGGG AGTTCACATA GAGAAAGTGA GATACATGAA GATGAGTGGA 
    ACATCGGCGA CAAAGGTGGC TATGAAACTC GAGTGTTCAG GGGAGAGTGT 
    TCCATGTTCC AACCTTTTCA TGAGAGACAT TGACTTATCT CCGGCCGATG 
    GTATTGATTC TGTCTCCTCT CTCTGCTCTT TTGCTCACGG CTCCGCACAA 
    GGCATCATTC GACCTTTATC CTGTTTCTAA CTATTTTAGT AATTTGTAAA 
    GTTTTGGGGT GTAAATTGAA TTACTATGTA AATGCAGGGG TCATATTGGA 
    ATAAACAACA ATGTTTTAGT TAAAAGGCCT GTATAACAAT GCAGGCCCAA 
    ACAAAAAGAT ATGAGCCCAA TAGTCACTGA AATTGTTTTC TCAAACCCAA 
    AAAACCTAAA ACCTTAAACC TCCGTATGTG TTCCGTCGTT AGCCTCCTGC 
    TAATCTCCAT CTCAGATCGC AATTTCTCCC TTTTCCGGTC ACTGCTCCGG 
    CTTACGACTA TAGCGTTCCG AGATAAAGTT CCGGCTGTGT TAATTAAATT 
    CGCCGTCNGA GGGATTTTAC NGGATATGGC TGNTGTTGAA TCGCATGGGG 
    A

AT1G80140.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 3888 Blast hits to 3869 proteins in 461 species: Archae - 6; Bacteria - 1036; Metazoa - 13; Fungi - 1239; Plants - 1472; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80150.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G36680.1); Has 20922 Blast hits to 6391 proteins in 198 species: Archae - 3; Bacteria - 20; Metazoa - 73; Fungi - 116; Plants - 20269; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
Link
InterPro Scan - TAIR