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11-0313-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18312879 [Map]; Strand: w
      • AT2G44330.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 1694; Region: intergenic
      • AT2G44340.1 - [+] show detail - VQ motif-containing protein
        Distance: -1400; Region: intergenic
    Flanking Genome Sequence: 11-0313-1 - 5-prime edge 
    GTTCCGTGTG TAAGTTTTCT AAGACCTCTC GATAATACTC GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18312763 [Map]; Strand: w
      • AT2G44330.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 1578; Region: intergenic
      • AT2G44340.1 - [+] show detail - VQ motif-containing protein
        Distance: -1516; Region: intergenic
    Flanking Genome Sequence: 11-0313-1 - 3-prime edge 
    CACGGAACTG TGTTTTATTT TCTAGTCGTT ACAACATATT TGCAATAATG 
    ATCATTTCTA CAAAATTACA TTTAATTTGA AATAAGCAGA ATATAATATA 
    TGTACTTATA CAAGTATACA ACACCACTCT TTTTGGTGAA TT

AT2G44330.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G60080.1); Has 9788 Blast hits to 9762 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 2640; Fungi - 885; Plants - 4936; Viruses - 11; Other Eukaryotes - 1316 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G44340.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G60090.1); Has 74358 Blast hits to 8061 proteins in 139 species: Archae - 42; Bacteria - 73; Metazoa - 488; Fungi - 2072; Plants - 106; Viruses - 2; Other Eukaryotes - 71575 (source: NCBI BLink).
Link
InterPro Scan - TAIR