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11-0319-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1592228 [Map]; Strand: c
      • AT3G05490.1 - [+] show detail - ralf-like 22
        Distance: 245; Region: intergenic
      • AT3G05500.1 - [+] show detail - Rubber elongation factor protein (REF)
        Distance: -1206; Region: intergenic
    Flanking Genome Sequence: 11-0319-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACTCCCATCA TTACCTTATA AGCCAACATG 
    CCACCAACAG CTAATAAAGG AAGGATCAAT TCAATTCTGC TTTTATTGAT 
    CTTTCTGTCT ACTATAATTA ATTAATACGC TCCAAATATT TATTACTCAA 
    ACACCTCAGA TTCATATAAT TAAATTAACG GTAATCACTT TTCATTAACA 
    ATTGTTAGTA AACACAAAAC TACGCACAGA TCNNAAAATC ACNTGGAGNA 
    CTAGTNGCNA TTGGTGATCT ACNCANCTNT GAATTNNTTA TTNATGTGTA 
    TNNACCACAG NCNNAGGAAN TACTAAGAAG CGCGTTTNGT TGTNCGNTTT 
    TATACAAGAG AAGGACTAGG TGGNAGGTAG TTTNTTGCGC AAGGGNGGAN 
    CCNACCNNCN NTANCCGGGC AATAANNACT NATNCNCNNA ANGNAAATTG 
    AAANNAGANN CATNGNNCCN ANAAAATNGG GGCNNAATGG GATCGGCTAN 
    GGNANAAANA TNACTNGACN ACNNNNACCN AAAGCNGGGN NCNGCNCCAA 
    AGGCCNGNAG GGATNGCCTA GGCNGCNCAC CNGGCCGGGC CNTTGACNAC 
    CCCCGNCCCG GGAAAAGGGG GCNCTGTNCC NNCNNNANNG NGCCGGAGCN 
    ANGGNCCTNT TNGGGGGNAA ATNGCNCCNG GNTTTGGGNG GAANGGAANC 
    TCNNTNNTTT GNGTTNGGGG NNANANTGGG GAAANGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1592273 [Map]; Strand: c
      • AT3G05490.1 - [+] show detail - ralf-like 22
        Distance: 290; Region: intergenic
      • AT3G05500.1 - [+] show detail - Rubber elongation factor protein (REF)
        Distance: -1161; Region: intergenic
    Flanking Genome Sequence: 11-0319-1 - 3-prime edge 
    GATGGGACCA TCACAACCTA ATTCGTTACA TTTTTCTTCT TATACTAATT 
    TATCAGCCTC GAAACTTCGT TTTGGCTGTA ATTGTTTTTT TTATATAATT 
    AATGATGCGT CGTTGGATAT GTTTTTAGAC ATTATTATGG CTCTCAATAG 
    ACGAATCTGT AACCTTACAA GTAATAACGA ATGTAGTACC ATAATGAAAA 
    TGTGGAAAAC AAGAAGAACA AGTCGGAGTA TAAAATATTC TGTAGAGTTT 
    ATTACCCATA CAACAAAAGT TTTCATTTAT TCATGAAAAA TATACTCTAG 
    AGTTTAAATA GTTCTCTTTT AGCATGTGTA AAGATTCAGA AGTAGATAAA 
    TGTGGATAAT AATCTGAAAT GCCGAATATA AACAGAATCA TAGCCGCAAA 
    TGATTTATTT TTATATAACC AATGGGTTNG TAATTAATAT TACTCGAATC 
    TGTAATATTT TCCCTCCACC AAGTTTGAAA TNGTACTAAC AATGGAATCA 
    ATAGCACAAT CNGGTATAAG AAGTTTTAGT CATTTGATCG AGATAATGTT 
    GGAGTGTAGC TTTGGTTNGG GTCATGTTTG GGGCTNTTCT CCATTTNATA 
    CTTTGCCGAN GTGANNGAAC CACGCACTAA CATGGGTATA NNTCGTTCNA 
    AGNTTTNNAT TGGGCCTTTA CCTCTAANAT GGGCCATANG AANNGNGANT 
    AANNTTTGGN TNGNNTAGGN GNGGGC

AT3G05490.1

Model type
Protein coding
Short Description
ralf-like 22
Curator Summary
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational Description
ralf-like 22 (RALFL22); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 266 Blast hits to 266 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05500.1

Model type
Protein coding
Short Description
Rubber elongation factor protein (REF)
Computational Description
Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to 129 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR