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11-0356-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12585621 [Map]; Strand: w
      • AT2G29290.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -235; Region: promoter
      • AT2G29290.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -235; Region: promoter
      • AT2G29280.1 - [+] show detail - pseudogene, tropinone reductase, blastp match of 46% identity and 2.4e-09 P-...
        Distance: -268; Region: promoter
    Flanking Genome Sequence: 11-0356-1 - 5-prime edge 
    GGTGTCAAAT GAGGGTCCAT CAAAGTATGC AGATGTCACT AAGGGTTTCC 
    ATTTAGAGTA ATGAGACATG AAATAGTGGG TTTTGGGTTT TGAGTATTTG 
    GGTTTTGAGT AAGTATTCCA ATATAATATA TGTTCGGATA ATTTTGATAG 
    CTAAAATCAT TGTCCACGGT CCCAAACGCC CACTAGTTTA GGTAAGATGG 
    ACAGCCCTAG ATGTAACTAT CAGGAGTTGC CCAATGTCTA TCATGTAATT 
    GTATCTTTTC TTATTTACAA AGTTGTTAGT AATCTATCTT TATATACAAT 
    TTAAAGAAGC TCTTGTTAGT TATGTGATAG ATAAAGATGG ATAACAGCCG 
    ATGGAGTCTT CAAGGTATGA CTGCTCTTCT GACCGGTGGA GCGGGAGGAA 
    TTGGGTTTGT CTTCTTACCC CATTTTTCTA CTTCTATTTG ATATCCAAAA 
    TGGTCAAGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12585505 [Map]; Strand: w
      • AT2G29290.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -351; Region: promoter
      • AT2G29290.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -351; Region: promoter
      • AT2G29280.1 - [+] show detail - pseudogene, tropinone reductase, blastp match of 46% identity and 2.4e-09 P-...
        Distance: -384; Region: promoter
    Flanking Genome Sequence: 11-0356-1 - 3-prime edge 
    TTGACACCCA TGCTGAGGAA AAAAATCTCT CAACATCAAT TCTGACCACT 
    TGTCTTATCT TGAGTTTATT TCAAACCCAG CTAGCTAGTT CTTCCACTAT 
    GTGGTATGTC AGTATATGAC CACCTTGTAG GATTTGGACC AAAGTTCTTT 
    TATAAATTAC TAGAGAATAC CCATGGATAT TGCATTTTGG GATTTCAAAC 
    CAAATTAGAC ACTCCATCAC ATGTTGAGAC ACCAAATGAT ACCATTAGGC 
    GTTGGCCAAA GTAGATAATG AATT

AT2G29280.1

Model type
Pseudogene
Computational Description
pseudogene, tropinone reductase, blastp match of 46% identity and 2.4e-09 P-value to SP|P50165|TRNH_DATST Tropinone reductase homolog (EC 1.1.1.-) (P29X). (Jimsonweed, Common thornapple) {Datura stramonium}
Link
InterPro Scan - TAIR

AT2G29290.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: senescence-associated gene 13 (TAIR:AT2G29350.1); Has 121057 Blast hits to 120745 proteins in 3594 species: Archae - 991; Bacteria - 79410; Metazoa - 5524; Fungi - 6125; Plants - 2737; Viruses - 5; Other Eukaryotes - 26265 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29290.2

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: senescence-associated gene 13 (TAIR:AT2G29350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR