1. Home
  2. Mutant Lines
  3. 11-0386-1

11-0386-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1236963 [Map]; Strand: w
      • AT1G04530.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -929; Region: promoter
      • AT1G04540.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -293; Region: promoter
    Flanking Genome Sequence: 11-0386-1 - 5-prime edge 
    CACATACGTA AGTTGAAATT GGAAAGAGTT CTTCACCAAA GCTAACTTGA 
    TCCTCACGAA CGTCTCCTAA AATAGCAATC TTCAGCTGAA GAACAACACA 
    CGCCTCCTAA TAAACTCGTT GTCTTTCTCA CATACACAAA ACCAAATTTA 
    GCAAAATGGT TATTATTACC TTTCTCCCTC CTTTCGGAAA TTGCCACCAC 
    CAATCAAACA ATCTACCTTC TTCTTCATTC ATCATTCACT TCTCAGAATT 
    TTGAGAATTT TGAATTGAGA ATTGCGAGAG AGATCTCATT CTCCCTCTCG 
    CAATTCTCCG TCCCCTCGAA TCCAACAAAA AGATTTTAAT GTAAAATCAC 
    TCTATTGATC CACAATGTCG ATGATGTTCC CATCGTTTCA GTTGCTAGAA 
    CTTAACATAA TATCAGCTCA GGACTTGGCT CCCGTCGCAC GCAAGACAAA 
    GACTTATGCG GTTGCTTGGG TTCATTCCGA ACGTAAACTT ACCACCCGTG 
    TCGACTACAA TGGCGGAACA AACCCAACTT GGAACGACAA ATTCGTATTC 
    AGAGTCAACG AAGAATTTCT CTACGCTGAT ACTTCAGCAG TGGTTATCGA 
    AATATACGCC TTGCATTGGN TCAAAGATGT TCATGTAGGA ACAGTTCGTG 
    TCCTCATTAG CAACCTCATT CCTNCTAATC GCCGTCCAGG ATACAGAACC 
    AGC

AT1G04530.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G17940.1); Has 713 Blast hits to 362 proteins in 65 species: Archae - 10; Bacteria - 98; Metazoa - 37; Fungi - 8; Plants - 512; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04540.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Link
InterPro Scan - TAIR