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11-0413-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22712617 [Map]; Strand: w
      • AT5G56080.1 - [+] show detail - nicotianamine synthase 2
        Distance: -253; Region: promoter
    Flanking Genome Sequence: 11-0413-1 - 3-prime edge 
    ATTTTGAGGA TAGTAATGAT AAAGGTCAGT TATAAAATTT GTGAGGACTT 
    ATTAGGAAAC GAAACGTTTT GAAACAAAAA AACAATAGTT CTAAAACATA 
    CATTAAAATG ACCTAGAGGA AATATTTGTA ACCTATATGA ATCGAATCAA 
    ATAAATAAAA TAACAAAATT TAGCCAAGAA TGGACCCCAC ATGCGTCAAT 
    AAATAACGAC CCCTTGCGAG GGTTAAGGCA ACACAACAAC ACAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22712733 [Map]; Strand: w
      • AT5G56080.1 - [+] show detail - nicotianamine synthase 2
        Distance: -369; Region: promoter
    Flanking Genome Sequence: 11-0413-1 - 5-prime edge 
    CTCAAAATAG TAAAAATACC ATGTACAACT TAAAAAATGT AAAAAGAGGA 
    CAATACTGTT ACCTATTTTC ACATTGCTTA GGAATGAGAG TAATTAATGG 
    CTGATCAAGT TACNTTTAGT CACAAATTGG CGGGGAACAA GACAAACTAG 
    TAACTTATAG AATCATATAC ACTCTTCAAC TAAAAATCGC GATATGTTCC 
    ATTTATGGAT TTTATTGGGT TTGGTTTCAT GACGAATGAA TTTACCAAAA 
    TAATAAGAGT TTAACACACA TTAGAATTGG CTTCTTTTGT TACACATAAT 
    AGTTTTAGAC ACATATTTTG TAAATCAGTA AATGGTAAAT GCCAACATGC 
    AACGCAAACA TTTTTTTCTT TTCATTTTGT TTATCGTGTT TTCATTTACA 
    AATTTTTAGG TCTATTAATT ATAGTTATAA GGTAACGGAA ATGAACATTT 
    TAACTATATT TTCATGAAGA AAAACGAAAA GGTAACCAAA ACTCAAAAAA 
    TTAAGAGTAA TTTTTCTCCA CAAATTCACA TTAAATATTA GCGTTACTCG 
    TCGAGTGTAA ATATTCCATT AGTGATGTGT GCGTATGCGT ATGCTTATGG 
    TTGTCATTAC ATAATCTCAC TGNTATGCAT GAATGGAATC TAAAGGAAAT 
    CCTACGATTT ANTCATTATN CGTGTAGNCG NGAATAATTG GTAATNGTAT 
    CAATCNTN

AT5G56080.1

Model type
Protein coding
Short Description
nicotianamine synthase 2
Curator Summary
Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.
Computational Description
nicotianamine synthase 2 (NAS2); CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: nicotianamine synthase 1 (TAIR:AT5G04950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR