1. Home
  2. Mutant Lines
  3. 11-0477-1

11-0477-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 930492 [Map]; Strand: c
      • AT4G02100.1 - [+] show detail - Heat shock protein DnaJ with tetratricopeptide repeat
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0477-1 - 5-prime edge 
    ATCCTGAAGC ATATCGGCGA CGTCTTTGTA TCGACGGAGG TAAAGAAGGG 
    ATCTGGCTTT GAGTTCGAGA GCGAGTTCGT AACGAGGAGA TACAGAGAGT 
    GCAGATTCCA GAAGATTTAG AGCTGATTTC ACGTCGTTTG GATCTTGACT 
    CGCTATTAAA CTCTTTGCTT CTTTCATGTA TTTATCAACG ATCTATGAGA 
    GAGAGAGAGA TAAAAAACAA CATAATTTGA TGAGATCGAA TCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 930608 [Map]; Strand: c
      • AT4G02100.1 - [+] show detail - Heat shock protein DnaJ with tetratricopeptide repeat
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0477-1 - 3-prime edge 
    TTCAGGATTA CATTCCTAGT CTTAAATTAG CCGGCGGCGG CGAAGATTCC 
    GGTATCGGTT CATCTGAGCT TTCTTTTACT CATTCTTCTC GTGAATCTGT 
    CAAACTTCTC AACGATTTGC CTAGTCATCA TCACCATGAC TCGTCTTTTA 
    AATGCNTTCT CTGTCTCTGA TTTGAAGAAG AAAGTCATGG CTGGTCTCAC 
    TAAAAACTGC GACGAACAAG GGCAATGGAG GTCATTTACT ATACCAAAAA 
    AAACATTTCT GATTTTCACC CGACCCGGAT TTTTGATTCG GATCTTTTTC 
    TTCTTTCTGT TACAGATATT TGGTTTTGGG TCAAGCT

AT4G02100.1

Model type
Protein coding
Short Description
Heat shock protein DnaJ with tetratricopeptide repeat
Computational Description
Heat shock protein DnaJ with tetratricopeptide repeat; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G47440.1); Has 318 Blast hits to 309 proteins in 95 species: Archae - 0; Bacteria - 4; Metazoa - 68; Fungi - 63; Plants - 160; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR