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11-0543-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1373154 [Map]; Strand: w
      • AT1G04860.1 - [+] show detail - ubiquitin-specific protease 2
        Distance: -53; Region: promoter
    Flanking Genome Sequence: 11-0543-1 - 5-prime edge 
    CTCCCAACAC AACTCTATCG ACCAAATATT TGGTTCGTAA ATATTAATAA 
    TTACTCCAAA ACAAATCTTT AAACATTTAG TTCGATATTA ATTAAACCAA 
    AAAAATGTTT TTTTAGACTT TAACAAATAT TCTAAACCAC TTGAAAAATG 
    TTCAAAAAAG TTAAACAATC TTCACAGAAA AAAAATCTCT TGAAAATTAA 
    TACCTAAGAA ATTTTTGGAT GTTTAATCAA ATACCAAAAA TAATAAATTA 
    TATCACCCAT ATAAAAATCT ATTGAAAATT GGTATAACAA TCTCGTTTAC 
    ATAGAAAAAA AAGGCAAGAA GCAATAAAAC ATTACATTNG GGGTTCATGC 
    NTGGGATACA ANAACCAGCA AGCCCCANGG AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1373038 [Map]; Strand: w
      • AT1G04860.1 - [+] show detail - ubiquitin-specific protease 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0543-1 - 3-prime edge 
    GTTGGGAGAG CCTATGTCAC TAACCCCTTT GTCTGCCCCT CTTTCGGAGC 
    GATTCTTTTC TCATTCTTTC GTCGGACTCT CTGTCTCCTT TTGACGGCGG 
    CACCAACGAC AAAGCAAGCA AGCAGTGATA ACATCTATCT ATCTCTCCGT 
    CTAAACCAAT TGATTAGGCT AGATCCCAAT TCTTTGAGTA TCGATTCTTC 
    TTCAATCCTT TTTATGTGAA TATTCTCCTA AAGCAGCAAC CTCTTGGGTT 
    CTTCTTCTTC TGGGTAAAAT TCTCTGGATT CTGCTTTTGC TTTGATACGA 
    TTGTTTTGAG CTACTTGTTT TTTTTGGTTC CTGATTGCGT TAAGGGTCAG 
    GAGGCTTAGT ANAACTAAGA TATGAAATCT TAATCTGAGT TATTTCGATG 
    CATAGACTTT GGATTCTGGA TCTTTGAGTA CTAGTCATTA CAAAGTCGGA 
    TAATTTCTCT GTAGGGTACT TCTTANAATA CTGATTTGAT TTGATTTTAT 
    GGTTAATTCT CAGTTCGTGA TAATTCTTAA NACTTTTTTA GTGGTATGTC 
    TTAAAATCAT GGAATTGAAA TGGGCAGGTN CNATTTTTGA ANGGGGGATA 
    TNNGATTTTG AATCCATATA TGCNTNGATG GATGTGGATA ANTNNNTTGG 
    NGNNTTTATN TGNGCATGGG GANAGTTCNA AGNTNNTNTG NNGGNAACNC 
    CTNNNNNNNT NNNNNAANNA NATTNA

AT1G04860.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 2
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 1 (TAIR:AT2G32780.1); Has 10400 Blast hits to 6714 proteins in 274 species: Archae - 0; Bacteria - 50; Metazoa - 5279; Fungi - 1927; Plants - 1459; Viruses - 5; Other Eukaryotes - 1680 (source: NCBI BLink).
Link
InterPro Scan - TAIR