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11-0554-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 476535 [Map]; Strand: c
      • AT3G02330.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G02335.1 - [+] show detail - pre-tRNA
        Distance: -267; Region: promoter
      • AT3G02340.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -468; Region: promoter
    Flanking Genome Sequence: 11-0554-1 - 3-prime edge 
    GNGAGGNCTT TTTNGACCGT TACCGACCGG TATNATANNT NCTCTGTNAG 
    ACAACNATTG AATGAAACCA CTGATCTGGT CATATGCAAT AATCTGAGAC 
    TCTCCGCCAT GAGTCATAAC GAACTGAAAC TCAGTGGTAT CTATGGCCGG 
    GATTGAAACG GATTACAATT GCTTNGGTTC GGNTCACCTC GGTTTGAAAA 
    ATATATAAAC CGACTGACTA GGCACTAGCT ATATTACTCA AGCGGTTAAC 
    ACGCCACGGG GAATCCATNT TNGGACTNTT ACTATTCTAT NAAATANTNA 
    AAAAGCATTA CCANATCAAC AAGGNCCGNN GTNGTATACN TGGTAAGTAT 
    NTCCCACCTG NCANGCCGGG TGACCCGNGT TCAATCCCNG GNAACNGTGT 
    AGTTTNTTNA TCGNGGGNNT NAANCCACNT GCNGANACAC TGTCATACAT 
    ATNACNANAC CTATGNNGTC NACNANNTTN NACAGATNTT TGCCCNTNNT 
    GNAATNNNNT TTNTNCNTNN TGNGGNNTTC NTTNNTANNT TANGNANTAN 
    GNNNANNGNC ANNTNNAACA NCGCTNTGGG GCGNCNCNAN NNAGNATATN 
    NNGNGNTNNA NNNTACNGNG CCATANNNNN GNANGNCCAN NNNGGGGCCN 
    GNANNNCANG NCNNNAATCN NGAGNAANGN GNNNCNNGAC ANANNNNNNC 
    GCNTCGNNAN NACTNCNNGC NANTNGNACA CNNCNTNNNN NGATNGAGTA 
    TNNCNNAATC GGANNNTACT ATTNCGNNCC CNNNGCANNG NNNGTGNANA 
    AGANNNANNN NCTANANATN CT

AT3G02330.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39530.1); Has 56701 Blast hits to 14050 proteins in 283 species: Archae - 2; Bacteria - 22; Metazoa - 148; Fungi - 141; Plants - 55528; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02335.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asp (anticodon: GTC)
Link
InterPro Scan - TAIR

AT3G02340.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15820.1); Has 9104 Blast hits to 9081 proteins in 277 species: Archae - 2; Bacteria - 2; Metazoa - 2595; Fungi - 690; Plants - 4590; Viruses - 42; Other Eukaryotes - 1183 (source: NCBI BLink).
Link
InterPro Scan - TAIR