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11-0563-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 245941 [Map]; Strand: c
      • AT1G01670.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0563-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCAATT GCTCTTCTTC AGCTCTCCGG CTAATTGAAC GGCGGTTGAT 
    CGGACATTAT TGGTCTGAAA ATCGGATATA GAACAGGTAA ATTTCGAAAC 
    GAAATTTCTC ACTATCAAGC CAAGCTCTCT ACATGTATAT ATTTTTTGTT 
    TCTACTTCTC CGTGACTTCG TCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 245950 [Map]; Strand: c
      • AT1G01670.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-0563-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGAGCAATTC TATGAGGTGG AGCCAGTGAA GAAGTCAACA GACTACTGAG 
    CAAAAGTTTT TTCCTCGAGA AATAATCGTG GAGTTTAACG ATTCAGGTTA 
    CGACACGTCA CGAAGCTATT AGTATGAACG ATTAGAATTA CTTCGCCTAG 
    ATCTCTTCTT ATTTAAGATC CAAAAAGCT

AT1G01670.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 3857 Blast hits to 3144 proteins in 246 species: Archae - 4; Bacteria - 101; Metazoa - 863; Fungi - 177; Plants - 1725; Viruses - 10; Other Eukaryotes - 977 (source: NCBI BLink).
Link
InterPro Scan - TAIR