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11-0694-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2175978 [Map]; Strand: w
      • AT1G07090.1 - [+] show detail - Protein of unknown function (DUF640)
        Distance: -1084; Region: intergenic
      • AT1G07100.1 - [+] show detail - pre-tRNA
        Distance: -1907; Region: intergenic
    Flanking Genome Sequence: 11-0694-1 - 5-prime edge 
    GTTTCCGGGT AAAACCAGNG CTAGCCTAAT CTAACTCTAN ACTGTCTAAT 
    ATTGGAAGAT ATATATACAT GCATGTATGT AANATANCCA TAGAAAAAAA 
    TCATCTATTT TACTTTTTAA CTGAGGGATG GAGGTATAAC NTGTATTAGC 
    CTGGTCGTTA ACATATCAAA TCGTACGTTT GAAAAGATTA GAATCGAATA 
    CACACTCGAA CCTCTAAATC TCGTTATAAC AGTAGTAGTG ATCAATACCA 
    AATCGTTTAT TGATTAGGAC AGTGAGNGGN TTCAAAAGCG ATTCATTTAT 
    GTTTTGATTA TCGATGTCAG AAATTTCTTA NTTAGCAAAT AAACNACGTT 
    CAATTTTTTT TTTTTTGGGG NCNCCCNAAA NAAAANNNGG GGGGNGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2175862 [Map]; Strand: w
      • AT1G07090.1 - [+] show detail - Protein of unknown function (DUF640)
        Distance: -968; Region: promoter
    Flanking Genome Sequence: 11-0694-1 - 3-prime edge 
    CCGGAAACCC TTCATATTTC CCTTTTCCTA ACAAATACAA GCAATTTGGT 
    AGAAATATAA TGACGGTTCT TGCAACATAT ATTACATGAA AAAAGCATAT 
    ATTACATATA TAACATGGTA AATTTTATGA TATATATATT ATATACCTGG 
    TTTCATGAAT TTGTGATTAA TTTATAGAAG TACCAAAACA AATATCAGAA 
    AACCTATTTA TTTCTCATTA TACCACAAAT TTGAAAGTCT CTGAAACCAA 
    TATTTGTAAA TTTTTGCTAT TATATATTTA TGGTGGTAAT TTTGTAAAAC 
    AAAATATAAT ATGAGAACAA TCCGCCCATA CATTACAAAC CATATTGATA 
    ACAACAAATA AAATTTAGCA TCAACTATAT AGCAATGTTT TGTGAAAGCT 
    AGTTATAAGA TAGTATAACA CAAGGCTTTG CATGTATACA TAAGCCCTCA 
    TTTTGACTAT CCAAATTGTG CATTCGGAGG GCCTTTGGGA GAGATTAAGA 
    CGACATCATT TGCTTTTGTT CTTTTCATGG CCTGATGTAT ATATTGATCT 
    CATCATATAA ATATATAATC TACTATGAAT ATTTAATTAA TTACCATATA 
    AAATTTGTTA AGAGAAGAAT ATGAACAAAA AATGTAAACC AACTTCCAAG 
    TAATTATTAA ATTACAAAAA CTAATAATTC ANATCTGNCT TCCATACTTG 
    CAATTNCCTG ATNGGNTTAT AATTCCAAA

AT1G07090.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF640)
Computational Description
LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G58500.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07100.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ile (anticodon: TAT)
Link
InterPro Scan - TAIR