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11-0799-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18392724 [Map]; Strand: w
      • AT3G49610.1 - [+] show detail - Domain of unknown function (DUF313)
        Distance: -1307; Region: intergenic
      • AT3G49620.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -1023; Region: intergenic
    Flanking Genome Sequence: 11-0799-1 - 5-prime edge 
    TTCGCGAGCA TGCACTATAT AGTCCTTAAC TTCCCCGTGA ATTACAATTA 
    GAATTTCCTT AGCAAGACGA TTTATTATTT ACTAAAAAAA AATCTGATAT 
    ATATCTGACA AGCAGGGCCC GGCTCAAGGG GTGTGTAAGT GGAGTATTTG 
    CTCAGGGTCC AAAATTTTTT ANACTGAAAT TAAGGGCCAA TTTGAAAAAA 
    TTGATTANAT TTAAGGTCCC AAAAAATAAA TTTGATTAAA TTAGAGGGCC 
    AAAAAACAAT TTTGCTTAAT TTGNGGGCCA AAAAAATATT TTAGTACGTG 
    GACTCAAATA TCAANATCAG GGCCGGCTGA TGGGGTGTGC AAGTGGAGCA 
    TTTGCTCAGG GTCCAATTTT TTTATAACTG AAATTAAGGG CTAAAATGAA 
    AAAGTTATTA NATTTAAGGC CTAACAAATA AATTTGATTA AATTANAGGG 
    CCAAAAAATA ATTTTGATTA ATTTGGGGGT CAAAAAAATA TTTTAGTACA 
    ANACTCAAAT ATCATTGAGC CGGCCCTGCT GACAAGTGAA TTGGATC

AT3G49610.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF313)
Computational Description
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT5G24050.1); Has 142 Blast hits to 142 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49620.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.
Computational Description
DARK INDUCIBLE 11 (DIN11); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: aging, response to light stimulus, response to sucrose stimulus, cellular response to starvation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G49630.1); Has 8746 Blast hits to 8700 proteins in 1000 species: Archae - 0; Bacteria - 1165; Metazoa - 118; Fungi - 1060; Plants - 4722; Viruses - 0; Other Eukaryotes - 1681 (source: NCBI BLink).
Link
InterPro Scan - TAIR