Home
Mutant Lines
11-0823-1

11-0823-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1965026 [Map]; Strand: w
- AT1G06440.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase family protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G06450.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: -814; Region: promoter

CGTCGCTGTA TATACCCACA CTCTCTGCGG AATTATATCG AACACCTAAC 
AGGCATTAAG GGAAAAAACG AAATTAAAAA ATGAAGTAGA AGAATTATAT 
GGACCTTTGT ATTTTCATGT CCAAGACCAA AACACATCTA TAAGCGAATC 
AATTACCGCT ATAAAATTTA TTTAAACTAA TAAAACACAT AGAATAATAG 
TTTAGCCTAG TAAATAATTA TACTAGTTTG ATATCATAAA CTTTTGGTAT 
GAGAGGATAA ATGCTGTCAA ATATAAAGTT TTATAAAACA AAATATTTTA 
ATGTTATGGA TAAGTTTTTG ACTTACAAAG AATTAAAATG GTATGATGCG 
ATTTCTATAA TTAGTGTCAA AGCATCTAAT AACAATAACC ATTCAAGTTC 
TTAGTGTTAA AAAAAAAGNG TTTAAAATCA AAAGTTTAAA CACTAATTGA 
TACTCATTTT ACATATTAAT CTAATACTTG TATTGGAAGT TTTGCCACTA 
TCTATTAATT ATATGTAATT TACTTTTTGG GACGGAAAAA GGAAATTGTG 
GATNGGTTAA AAAGAGAGTA AAAGCNCCAT ATAGTAGCAA AAAGTAAAAG 
ATAACTACAA GAATTTCCTA CCTCCTAACG AAAATTAAAA AAGAAGAAGA 
AATTTCTAAA TTAATTTTAA CAGAANTTAA TTTAACAAAT AAAATTTTAA 
TCNGAGAGAA TATAAACCGN NTGATCAACC CCGCGTTAAA AGTAATTG

3 prime edge [+] show sequence

Chromosome: 1; Position: 1964956 [Map]; Strand: w
- AT1G06440.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase family protein
  Distance: 0; Region: exon1 (5UTR)
- AT1G06450.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: -884; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
GACGTTGTGG AACGCGGAAA CTCAAAATAG CTCCATATAC TCTTTGAGAT 
ACTATGAGGT TCCTCCTCAT GAGATCACTT CTGGTTCACC CATGTGGTGG 
CTCCATCATC AATGTCCGAT CAACGACTAC GTCTGCTCAA TATGTAGCTT 
CCAGATCAAG AGACCCTGTT TTCGAGAAGC TCATGGACAA ATACAAGAAC 
CTTCTCAAGG TCATTGCCAT ACAAGACCTT ACCCTCGCCA ATCCAACAGC 
TGATCCTCCC TCTCTATCCA TTGAGTTTCT CTCCAGGCTC TCCCAGAAGC 
TCCACCTTAA TCGTGGCGCT GCTTCTTTCC TGCGAAAGTA TCCTCACATC 
TTTCATGTCT TGTATGATCC TGTGAAAGCT GAGCCCTTTT GCAGGTTAAC 
TGATGTAGCC ATGGAGATTT CTCGCCAAGA GGCTTTGGCT ATCACTGCTA 
CTTTGTCTCT TGTTGTTGAC CGGTTGGTTA GGCTCTTGTC TATGTCCATA 
TCAAAGTCCA TTCCGCTTCG TGCGGTTTTT AAGGTTTGGA GAGAACTTGG 
GCTCCCAGAT GATTTTGAGG ACTCTGTGAT CTCAAAGAAC CCTCATCTTT 
TTAAGCT

AT1G06440.1

Model type: Protein coding
Short Description: Ubiquitin carboxyl-terminal hydrolase family protein
Computational Description: Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G33495.1); Has 412 Blast hits to 405 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 411; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G06450.1

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G44240.1); Has 884 Blast hits to 883 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 148; Plants - 363; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Link: InterPro Scan - TAIR