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11-0838-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 106313 [Map]; Strand: c
      • AT1G01250.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -983; Region: promoter
    Flanking Genome Sequence: 11-0838-1 - 5-prime edge 
    CCTGCATTGC CCAAGTATAT CATATATATA AAAGAAAATA AATTAATAAG 
    TTAATAATTA GGAAAGGAAA AGGGTTTCTT TGTAGATATA TTTTCACGAT 
    CATGGCATGC ATGCACACAA AATTACACCT AACAAAGTGA TTTCATTATA 
    ATAATAAATT ATTGTAAGCA CACTTATAAT TTTCCACTGT CAGATACTTA 
    TTTTAACTTT GGCTGAAGCT

AT1G01250.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 5404 Blast hits to 5361 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5399; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR