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11-0859-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19679912 [Map]; Strand: w
      • AT5G48550.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G48550.2 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0859-1 - 3-prime edge 
    CTCGAAGATT AGTGAGGCGG AAGAGTTGGA CGAGAGACCC CTGGATGATA 
    GTTGGGTGAG GAAACCACTC AAATGTCTCC TATATAGGAC CATGTGCTTT 
    GTCCAATTTT TAGTTTCCAA CCGATAGCCT GTCTCAGCAG ATCGACAACC 
    ACATGTACAA GCCCCTTGAG ATCCCTGAAA TATTTGTAAG AAATAAAACT 
    ACGATCATAC AAAATACTAA TAAATTAAAG GTATAATCCA AAATTCTATG 
    TATACAATAA ATTATCGATA CGCTATAATA GTAAAACTTG TTGTCTGACA 
    CCCTATTTAC ATTTGTATTC ATGACTTTCA TCATACTTAG TGACAGCTTA 
    ACAATTGTTA TGAAAACAAG AGGCAAAGCT ATTACTTAGA CACTACTCAC 
    CTCGCTTATA GTGGCAGTCC AATAAACATA TCCACCAATT GTTACCGTGG 
    AAGAAGAGAA GGAAACATGG CCGAAAGGTA GAGCGGAGGC GGAAGAGGAG 
    ATGTCTAAGC TCCTCCATTT TGTGTCTGTA TCTCCGAGGC TGAATATTTC 
    GGCCACAAGC ACGTGCTCTT GTGTCTCCCA AACACTAATG ATCTTGTGAG 
    TGTTTCCTTT GGGATCATAT CCGAATCCTA GAGGCTGTTT CCATGCGTTT 
    TCGTCCCCCT GTGCTGGTAT CTTCATAACC TCTTTCCGTA TAGGGTTGAA 
    GACAACNGAC TATTAGAATT ACATCTGGTT TAGAATTAGT CCACCCNNGC 
    TTATAGGGTG AAAATAAGAT TGG

AT5G48550.1

Model type
Protein coding
Short Description
F-box associated ubiquitination effector family protein
Computational Description
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated interaction domain (InterPro:IPR017451); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G48550.2

Model type
Protein coding
Short Description
F-box associated ubiquitination effector family protein
Computational Description
F-box associated ubiquitination effector family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl; CONTAINS InterPro DOMAIN/s: F-box associated interaction domain (InterPro:IPR017451).
Link
InterPro Scan - TAIR