1. Home
  2. Mutant Lines
  3. 11-0884-1

11-0884-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22366551 [Map]; Strand: c
      • AT5G55100.2 - [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
        Distance: -1771; Region: intergenic
      • AT5G55110.1 - [+] show detail - Stigma-specific Stig1 family protein
        Distance: -1319; Region: intergenic
    Flanking Genome Sequence: 11-0884-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TTACATAAAT GATCTTAAAT CAAAATTGAA
    GTCGATCTCT CCTATGTACA ACTCCGTTCT CTTTAGTCTT TTCCATGGAG
    TAATTCAACT CTTTTTTTCA TTCTATCTCT AATCTTCTAA TATGGTACCA
    TAGTTCGAAG TATAATTACC CGACATATGA TTTCTCATAG TATACATATA
    TAGTCCGTTT TGTAGTGATA TGTCCGAGAC AATGAATTAG TTTTATTCTC
    ATCCTATGAT ACATGTTAGA ATATCTCACA TTACAAATGA AAATACAAGG
    TATATAGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22366566 [Map]; Strand: c
      • AT5G55100.2 - [+] show detail - SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
        Distance: -1786; Region: intergenic
      • AT5G55110.1 - [+] show detail - Stigma-specific Stig1 family protein
        Distance: -1304; Region: intergenic
    Flanking Genome Sequence: 11-0884-1 - 3-prime edge
    TATGTAAGAG ATTGTCTGAT ATGAACAGAA GACTAGTGAC GATGGAAGGA 
    ACTTAGCCTT ACAAAGTTTG CTCATGAGTT TCTAAAGTAA AAACTTTTAT
    TTTTTGACTT ATATAGATTA TTTTCATATT ATTCTATTGT TTACAAGTTA
    CAATGTAAAA ATGGCCTTTC ATATATTAAA TTATATAATC GTGGTTGATT
    GGGCGTATGC NGGATCGAGA ACTTTAGAAT T

AT5G55100.2

Model type
Protein coding
Short Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Computational Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147), SWAP/Surp (InterPro:IPR000061); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55110.1

Model type
Protein coding
Short Description
Stigma-specific Stig1 family protein
Computational Description
Stigma-specific Stig1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: Stigma-specific Stig1 family protein (TAIR:AT4G26880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR