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11-0889-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13011466 [Map]; Strand: w
      • AT2G30540.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-0889-1 - 5-prime edge 
    CTCATTAGGG CTTTCTCGAT CTCACGACAT TCAGGGTCTT TATCGATCTC 
    ATGATACTGT TGGGTGAACC CCAAGGTCTT GGAAAAGTAC TTGGACCGCA 
    TAGGACATGC AACACNGAGC TCTTGCTGAA AATAACCACT CCTTTCTCTG 
    ACGACATTCT CACAACTTTG TCCATGGTTT CTTGAAGGAG GTCTCGATCA 
    ATCTAGGGAT TGTTTCTTGG AGAAGAAGAA ACAAAATCTT CCTTCTCTTG 
    TGGATTGAAA GAGATTTAGA ACTGAAAACG CCTGAGATTA AACCTCGCTT 
    TTGGGGTTCC TGTTTGAAGA AAAGAGGGTT TTGTGTGTGT GTGTGTGTGT 
    ACTACAGTAT TAAGCTCAGT GTTGCCTGAN ACTTGAGTTT CTTGAACCAT 
    ATGCTATTTA TACGCANAGA AAGAAAGAAG AAAAGAGTGT TAGANACCAA 
    AAAAAGAGAG ATCACNGGAG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18282993 [Map]; Strand: c
      • AT2G44220.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -810; Region: promoter
    Flanking Genome Sequence: 11-0889-1 - 3-prime edge 
    CATGGAGATG GGACTTTTGG TTTTGGATCT TCATTAATCA CTCATGTTTA 
    ACAGTATCTA TCAGAATTAT TGGCCAATCT TCAATACACT AATACTATCA 
    TGTATAAATC TATTAACTAT TTTTGTGATA CNTTCATTTA AGACTAACAT 
    AAACNTTTGT TTTTTTTTTA ATTATCANCA ANCTTCCATT GTATNGGAAC 
    TATGTTTTTG GGATNGATCA ACAAANCANA ANCAAGTTAA AATTTACAAC 
    TNGAAATTTT TTTCTTATAA TTATCTCAAA TTAAACTTAT AATTNCATCT 
    ATGNGAATGA CANATN

AT2G30540.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Computational Description
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT1G06830.1); Has 1108 Blast hits to 1104 proteins in 175 species: Archae - 0; Bacteria - 32; Metazoa - 218; Fungi - 87; Plants - 737; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G44220.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G44240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR