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11-0894-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11989883 [Map]; Strand: c
      • AT1G33080.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon6 (CDS)
      • AT1G33080.2 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 11-0894-1 - 3-prime edge 
    GTTGGAGCGG GATGGCAGAA ATATGTTACG GNNGTTAACC TTGCTTGCTA 
    TTACCTTGTT GGAATT

AT1G33080.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 10684 Blast hits to 10626 proteins in 1975 species: Archae - 206; Bacteria - 7736; Metazoa - 140; Fungi - 326; Plants - 1352; Viruses - 0; Other Eukaryotes - 924 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G33080.2

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR