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Mutant Lines
11-1004-1

11-1004-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 28625408 [Map]; Strand: c
- AT1G76290.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
  Distance: 0; Region: exon1 (CDS)
- AT1G76300.1 - [+] show detail - snRNP core protein SMD3
  Distance: -476; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTC 
CATTTCTTTT CTATTGTTAT TCTCTATTGA GCTACTAAAA TCATATAAAA 
ATTGTGGAGT ATTTATAGGC AAACTATTTT GTGTAACGCT CCAAACAATT 
AATATGGAAT CTTTGATTAA TATGGACTAC AAGAAGCCAA ATTGGCAATT 
AAATCAGAAT CTGTGAAGAA GATTTGTACA TTGCAACATC TGTTTAGAGA 
ATCTGAGTTG TCACAACTTT TTTTTTTGAA TCTAATCNCC ACTCGGCTAG 
TTGTCACAAG NGTANAGGAN CTTTAATTTA CAAACAGTTC TTATCTTTTT 
ATTTTTTNGG GTCAACTAAN CAAATCTTAT CTTATCTTAT NCTAATAAAN 
CTTAANAGTA AAANCAAAGT ACCAAAAANG GCCCNCANCN TTCANCTAAN 
GGGCCCAATA ANCTAANGGG CCGANCCAAA ATCTAAATAA AAAGNCCNTA 
AAAGNGNGGN GCTTTAACNA NANAANCTAA NTTGTTCAAA GCT

AT1G76290.1

Model type: Protein coding
Short Description: AMP-dependent synthetase and ligase family protein
Computational Description: AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 1 (TAIR:AT1G20560.1); Has 63645 Blast hits to 61448 proteins in 3348 species: Archae - 1176; Bacteria - 38905; Metazoa - 2898; Fungi - 2339; Plants - 2105; Viruses - 1; Other Eukaryotes - 16221 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G76300.1

Model type: Protein coding
Short Description: snRNP core protein SMD3
Computational Description: snRNP core protein SMD3 (SmD3); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nuclear body, nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G20580.1); Has 1247 Blast hits to 1247 proteins in 231 species: Archae - 2; Bacteria - 0; Metazoa - 471; Fungi - 341; Plants - 223; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
Link: InterPro Scan - TAIR