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11-1073-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23128221 [Map]; Strand: w
      • AT3G62520.1 - [+] show detail - transposable element gene
        Distance: 980; Region: intergenic
      • AT3G62528.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 3261; Region: intergenic
    Flanking Genome Sequence: 11-1073-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAC TATACCGAAG ATAAGCAGAG TTGGATTTCA 
    ACTCTGTTGA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23095344 [Map]; Strand: w
      • AT3G62430.1 - [+] show detail - Protein with RNI-like/FBD-like domains
        Distance: -40; Region: promoter
    Flanking Genome Sequence: 11-1073-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    TCTGGGTAGT GAAAAGAGGC TTCTTTAGGG TTTGAGAAAA GAATGGATAG 
    AATCAGTAAT TTACCAGATG GACTTATTTA TCGCGTGATC TCCTTACTTT 
    CGACAAAAGA AGCTACTTGC TTGAAGTATA CCTCCAAGAA TTGGCNTGAA 
    TCTGGTTACT ATCATACCGG TTGCTATTTT TGATGATTCC TCGGCGTCTG 
    CCATTAGTGC AAGTTTCAAA GATTTCGCTG ATCGAATAAT GTTAGCTCGA 
    CTTGCCAGTC ACCGTATTAG GAGATTCTCT CTAAAGTTGC AGTCTTTGAA 
    TTTTGCTCAG TATAAAACTG TCAACGATTG TTTACGCAAT GTGTTGGAGT 
    CTGGAGTCTT GGATCTTGAA CTGGACATCA ATGTCAGAGG AGATTACTCA 
    CTGCCTTCTG AGATCTTCAC TTGCAAGAGC GTTGTGAAAA TGAAACTAGG 
    GTCTGGTTTT GTTATTGACA TTCTCCCTAA GAATGCTTGG CTTCCTGCTC 
    TTAAGACTCT CCTTCTTGAT ACAGTTCGGT TCGAATT

AT3G62430.1

Model type
Protein coding
Short Description
Protein with RNI-like/FBD-like domains
Computational Description
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G54160.1); Has 1224 Blast hits to 1202 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62520.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-86 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)
Link
InterPro Scan - TAIR

AT3G62528.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR