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11-1077-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 844795 [Map]; Strand: c
      • AT1G03400.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -605; Region: promoter
      • AT1G03410.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-1077-1 - 5-prime edge 
    TAGAGACTTA ACCATCACCG AGTTTTCAAA CACCTTCAGG TCCCAAACGA 
    TCAGTCACCC TGCGTTACAC CATTTCAGGA TCTGAAGCAA TTATATTGGT 
    GGCTCTGCTC GGTCTTCATC TCAAAGTAAC TTTCGTGAAA CCAGCTTCTT 
    TTTTCTTTCT CAAAAGGCAT AAGGATATTT GTAACATTCA AATAAGGTAC 
    ACAATGAAAA CTACTACTAC TTACTTACTT CATCTTCCAG CCGTGATGTA 
    ATAAAATTTG CGAGGAACTT TCTTGTTTTA AGTCCTCGTG TTACCATTTT 
    CATCTACGAA CTTTGGGGAT TAGATTCCCC CTCTTTTGAA CCTTGTTTTA 
    TGTTGTATCA CGAAAAAAGC T

AT1G03400.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03410.1); Has 8186 Blast hits to 8162 proteins in 1002 species: Archae - 0; Bacteria - 1123; Metazoa - 116; Fungi - 839; Plants - 4847; Viruses - 0; Other Eukaryotes - 1261 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03410.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2A6; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G03400.1); Has 8330 Blast hits to 8293 proteins in 997 species: Archae - 0; Bacteria - 1128; Metazoa - 114; Fungi - 883; Plants - 4883; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink).
Link
InterPro Scan - TAIR