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11-1130-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21932297 [Map]; Strand: w
    Flanking Genome Sequence: 11-1130-1 - 5-prime edge
    CCACTAGTCA TGATTCTTTC TCACTTTCTA ACCGACCTCA CTACCTTCCT 
    CCATCACACT CTTTACTGCG ATCTCCAAGC TCCACCGCGA GAACCACCCA
    TTCTCTTGCC TCTCCACTTC AATCGCCACC TCCATCTCCT CCGTCATCAG
    CCTCGCGTTC AATATTTGCA AACCGTACTG TGAAACCAAA ACAATCTAAC
    AATCACTCAT CAAAGACTCC CACATTGACC TAAACCCGCA TTGGCTAACA
    AAATATCTCA CTGAAGGATG CTTTAACACC AACGGTTTGC TGAATCCTAT
    CTCCATATAC AACGCTTCCT CGACGGTTGA TACACTCGAA GGAGACGTAA
    TTGCAACCAG AAACGGAAAA CCGGTTGATT CTAGCCCTAA ACAGAGTTCT
    TGAACTATCT TGTCTACAAC GGGTTGGCTA CCGAAAGCGC AGAACACAAC
    CTAACCGTGG TTGAATTTGG CTAGCCACTC CACCCATTGA GGCTCTAAGG
    AGGGCTGATT AGGTTGGGAT C
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21932223 [Map]; Strand: w
      • AT5G54040.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -1586; Region: intergenic
      • AT5G54045.1 - [+] show detail
        Distance: 30; Region: intergenic
    Flanking Genome Sequence: 11-1130-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGG 
    AGATGTGTTT TGACTGGCTC TAGTTTTGCA GATGGTTATA TTAATATGTT
    TGGACAGAAT TTAGTTGAAC TTGTGAATT

AT5G54040.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G54050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54045.1

Model type
Pseudogene
Curator Summary
pseudogene of UF3GT
Link
InterPro Scan - TAIR