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11-1152-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8240528 [Map]; Strand: w
      • AT3G23125.1 - [+] show detail - MIR173; miRNA
        Distance: 4282; Region: intergenic
      • AT3G23130.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -1774; Region: intergenic
    Flanking Genome Sequence: 11-1152-1 - 5-prime edge 
    CTCGTTGGTG AATGTTGAGC TTTGTAATTG CATTTGTACG GTTCCTCCAA 
    ACTATTTGCA GTTTGGCCTT TTAACAATCC TACTAGTAAA TCTATTTTAT 
    CCAAAGAGTT CAAACATAAA ATTACNACNN NGGGNCGCAC GACCANCCAT 
    GCTATGTAAA CCATGCATGA ACCGTATTTT AAAATCTAAT TTTATTTAAG 
    AAATTTTCAA AACATATTTT TGTTTTTACG TATCTTCGCA AATTTATGCG 
    ATTTTAAATT TTAGAACACA GATGTTATTA AACTCAAGAT CAGCTCGACT 
    CGGGTTAATT ATATCGCAAA ACAAATCTCT TAAAATCAAC GGGAGTTGCT 
    TCCCAATTCA TATAATCTGT CCCCTCAAAT TTCCCTAGAT CCTTCAATAT 
    TATATACCTC ACAGATTCCT CTATATAGAA CCATAAAATG GAAAATTTAG 
    CAAGTTCAAA CATTTAATTT TCATCCCATA GAATGTTCCA GATATATAAT 
    TAAACAACTC CAAATTAAAC ATAGATATGT GCCGACNATG GAAATCAAAT 
    GTCAAGTNAA GGGTCACAAT TTGAGCAAAC ACAACACATG TTGAAANGGA 
    ATTGGNCCAN AAAACATGGG NGATATATTA NCTNTNTAAA ACAAANAANG 
    GGANNNNGNT GAATCTATNT GNNTTATTAT TNAAATT

AT3G23125.1

Model type
miRNA
Short Description
MIR173; miRNA
Curator Summary
Encodes a microRNA that targets the TAS1 and TAS2 families of tasiRNA-generating transcripts. Cleavage of TAS1 and TAS2 transcripts by miR173 initiates processing of these transcripts in a 21-nucleotide register. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUCGCUUGCAGAGAGAAAUCAC
Link
InterPro Scan - TAIR

AT3G23130.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Flower-specific gene controlling the boundary of the stamen and carpel whorls. Similar to zinc finger transcription factors.
Computational Description
SUPERMAN (SUP); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: flower development, negative regulation of transcription, specification of floral organ identity; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 11 (TAIR:AT2G42410.1); Has 1049 Blast hits to 1049 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 1011; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR