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11-1155-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19811236 [Map]; Strand: c
      • AT1G53160.1 - [+] show detail - squamosa promoter binding protein-like 4
        Distance: 3935; Region: intergenic
      • AT1G53163.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -1026; Region: intergenic
    Flanking Genome Sequence: 11-1155-1 - 5-prime edge 
    GTAGTGATCA ATTCTTTCTC AATCCTTTTT TCAAAACTCT ATCTGATTTT 
    TGTCTCTTTT ATCTGATCTT ACGAGATCAT TACTTTGACA CTTTGTACCT 
    TACTCAACAG ACATTTTCAC TATCCAATAC AATTTTTTTT GTACAGTTAT 
    AAATCCAAAC TTCTAATCAT GACTACCATA ATCACCAGCT TCCAACAAAA 
    CCTAGTGGGA AAAATTTAGC CTATTTTTTT GCGTATCAGT TTAAATTAAT 
    GGATCCAACC TTTGGGANNA AACCAAAATN AAAAATCTAA AAANTNGTAA 
    TTTGGGAAAA ANGGGGGGGG GNGGGGATTT TTGGGACCAT TAGGGNNCCC 
    NCTTAAACCC CTTCCAANTT TTTNNTTAAA GGGTTNCNNN GCCNGGGNNG 
    GNGAAANNCN CCNGGCCCCN TNTAAAAANN AANAANNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19811352 [Map]; Strand: c
      • AT1G53163.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -910; Region: promoter
    Flanking Genome Sequence: 11-1155-1 - 3-prime edge 
    ATCACTACGT TCATTATGTT TTACTATGGT TAATCCATAA CTCGAATATC 
    TTATCTAATG AAGGATATGC GTTAATGCGC CTTATATTCT TGTAAAAAAA 
    GATTCTTGAT AATATATGAT GCGTTCGTGT CTTTTTTTGG TCAAAATTTA 
    TAATGTGTTC AAAACTTTAA ATCAATATAT TGAGAATCAT AAATTTGATT 
    TTGCGCGTAA GTCCTGAAGT AATATTTATT TTCATCTTCA TTTGCAAGCA 
    TTTTTGTGTC ATATTTCTTA TATGTGCATA AATGTAGATA ACTTTTTAAG 
    TTGATCACTA AGCAAATGTG TGTATTTTTG TATGAAAACT ACTAATAAAG 
    TGTGTCTCAA TCTAGACCAC AAAGGTCTAA ATCTTAATAT ATGCACTATA 
    GATTCCATTT GCATATGATA CCAGTTAGAT TACCAATAGG TAATTTGTTT 
    TCTCTTCTTT TAGTTGCCTT TAACTATTTT TTTATGATAA ACTTCCATAA 
    AGCCATTGTT GCTTTCTGCT AAAACTTATA AGAGTATTTT TTGGAGACCG 
    TGTCCCTCAC TACAAGAACC TCAAAGAGTA TGTGCCTCTG GCTCTGACTG 
    TGAGCTGANA CTTCAACTAA AAAAAATTCT TAAACAACAA ATNTAATCTA 
    TTTTNTTAAC AATAATTTAA CATCAATTTT GTNTAGNGGT ACCCTACCT

AT1G53160.1

Model type
Protein coding
Short Description
squamosa promoter binding protein-like 4
Curator Summary
Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.
Computational Description
squamosa promoter binding protein-like 4 (SPL4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of vegetative phase change, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 5 (TAIR:AT3G15270.1); Has 846 Blast hits to 845 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 846; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53163.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15250.1); Has 315 Blast hits to 216 proteins in 74 species: Archae - 0; Bacteria - 86; Metazoa - 43; Fungi - 52; Plants - 27; Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink).
Link
InterPro Scan - TAIR