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11-1160-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5572492 [Map]; Strand: c
      • AT1G16290.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 11-1160-1 - 5-prime edge 
    AACATTGCCA TATTGGAAAC GATACCTTGC AGTGAAAGAA AGTCTCCCTT 
    CAAGGTTGTT GCTTCTTATC TCTGCTTGCT CTATGTACCT AGTTTCTGCT 
    GTCATATTTT ATGCATGGTT GCACNGGATA AGGTTTTGTG TTGCCGTGGG 
    CTTTCATATT GTTAATTTTG TTCATACTAC TAATAAGGTA GTTGCACCAA 
    AGNAAAGGTT TNGAAGGGGG GAAAGCCGNA AGCTAAAACT TCAAGTTCTC 
    TTTTGGTTAA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5572565 [Map]; Strand: c
      • AT1G16290.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 11-1160-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TGACTTGTGA GTCGCCTTTT TTGTCCCACC ATTGTATGCT CTGACAACAA 
    ACTCTTCACT TCTCTGGCTG CACATGGAAA GTAAAATATA TTTAAAGTAA 
    TTCCAAGAGG AACTTAGACT TGTTGTCACT GAAATTGTAA AGCTAGCAAT 
    GTAAGCT

AT1G16290.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR