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11-1175-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5825589 [Map]; Strand: c
      • AT1G17040.1 - [+] show detail - SH2 domain protein A
        Distance: 0; Region: exon2 (CDS)
      • AT1G17040.2 - [+] show detail - SH2 domain protein A
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-1175-1 - 5-prime edge 
    CTGGGGATAA AACTAACAAA ATCGGTTATA CGATAACGGT CGGTACGGGA 
    TTTTCCCATC CTACTTTCAT CCCCTGATCA GGAGCTTCCC TGTGAAGGAG 
    AGTCAATGGC AAAAGCATCA TCTTCTTGTT TTCATCTAGA ACAAGGAAAG 
    GTGCACTAAC ACTCATGTCA GAGTGAACCT GAGAAGAAAG CCACTATTTA 
    ATCAGAAGCN TGGTTGTTAC AGTTTAAAAC TCATAAATCA ACAATGGTTA 
    TACTAAAAAA AAAAAAANNA AAAAACCNCC CCAANNTTNN ACCNTTTNCC 
    CCCANTTCCN AAAANANNTT ANTNNCNCAA AANNNGGNTT TTTNAAANCN 
    ATTTTANCCC AAANGGNNCC ANNGGGNCTT TTTNNAAAAC CCCCCTNTTT 
    NANANTNNCA AANGGGTTTN GGGGGNANTN NAAAAAANAA CCCCAAAANN 
    AANGGGNAAA AGNNNNAAAN NCTTNNTTTN CANCTNNANN NNCNNCTTTA 
    AAANCCNCCN CCAAAAANTT TTTTTGGGGG TAAATCCCNN AATCCCCCCC 
    CTTTTTANCC CCCCCAAANA AAAANNTTTN AATTTNGNGG NCAAANCCNT 
    TAAACCCCNA AAANNGAAAT NCCCCCCGNN NGAAAAAAAA AAAGGTAAAC 
    CCNTTTTTGG NGGGGNCCCG NNTTTTTTNN NGTTCCNNAA ANAANCCCNT 
    TTNNNAGNTT TNAGGNAACC NGGAAAAAAA CCCCCNGGGN AATTTTTNCC 
    CCCCGGTTTT TTGNCGGGTN GTANNTAAAG GGGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5825579 [Map]; Strand: c
      • AT1G17040.1 - [+] show detail - SH2 domain protein A
        Distance: 0; Region: exon2 (CDS)
      • AT1G17040.2 - [+] show detail - SH2 domain protein A
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-1175-1 - 3-prime edge 
    ANTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTCCTGATCC TGTTAACACT TCTTCTTGGA CTGAAGTTCC TAATGTTTCT 
    ACAACGGCTA AGTTTCCTCT TCAAAAATGG GTTCATGTGG GTTGTGAGGT 
    AGTAATTATA AGATCTCTGA GGACTCTTAT TAATTTGACC AATATCTCTT 
    TTCTTCGGAT TTACTGATTT CTGTTGTCTC CTAGGTTTCT AGAAACTATA 
    TGCGCCTTTA TATTTGTGGA GAGCTTGTAG GAGAGCAAGT CTTAACTTCC 
    TTGATGACCA ATGGTACAAA TTCAGATCGC GCACGAAAGA TATCGTTATT 
    TAGTGTTGGT GGAGATGGTT ATAGTGTTCA GGGTTTCATC CACAGTGCAG 
    AAGTTTTGCC TTCTAATCTC TCTGCAAGTT ATCACTACAC AAAGGTAGTT 
    TCTTGTCTTT GCCTTCTCTT CTTTTTCAAC AAAAGACTCT TGTCCTGTGT 
    TTCTTTATTT CGCTTCATTT CTTTTCCAGG ACCCACCTTT ATGGTTATCT 
    GTTGATAAGC CATCTACATC TGGAATTGAA TTGGATGAAG ATGGTGTTTG 
    GAGTGTCGTT AGTGGAACAT TTTGTTCCTT GGATGTTGTT TTAACCAATG 
    CTATTGGACA GCCTGTGCAC AAGGATGTGA AGGGTCATAC TCTTATGCTT 
    TCTATAAATT TCTGCATTTG TTTANCTCAG GAAGTNTTTC TGATNGCNCG 
    TNATCNNTT

AT1G17040.1

Model type
Protein coding
Short Description
SH2 domain protein A
Curator Summary
Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Computational Description
SH2 domain protein A (SHA); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein B (TAIR:AT1G78540.1); Has 341 Blast hits to 335 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17040.2

Model type
Protein coding
Short Description
SH2 domain protein A
Curator Summary
Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Computational Description
SH2 domain protein A (SHA); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein B (TAIR:AT1G78540.1).
Link
InterPro Scan - TAIR