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11-1207-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8956596 [Map]; Strand: w
      • AT2G20800.1 - [+] show detail - NAD(P)H dehydrogenase B4
        Distance: -835; Region: promoter
      • AT2G20805.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-r...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1207-1 - 5-prime edge 
    TCTATGAACC TTGAGCTTGG TAAAAACAAA GATACTTTTC CCAATTCTTC 
    TCTTGTTAGA TCACTAGAGC GTTTTGGTGT TGATGAACTT ACTCCTCAAC 
    AAGGATTGAG TAGCCTTGAC TTAGAGGATA AGAAGATATT CGAGGAGCAG 
    TTGGAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8956480 [Map]; Strand: w
      • AT2G20800.1 - [+] show detail - NAD(P)H dehydrogenase B4
        Distance: -719; Region: promoter
      • AT2G20805.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-r...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1207-1 - 3-prime edge 
    TTCATAGACA TAACTTTCTT CGATTTCACA GGTGATTCTT CAATATCTCC 
    CCAAACAAAC TTAGACAATT GAAAAGCCCT GAGATCATGA AGTCTGATAT 
    GTTCATCACC ATTCTTGGCT TTCACAAGAT TGTTCTCATA CTTTCTCTTT 
    AAACTCGCAA GCATTTTCAT AAATTGAACC TTAATTAAAG ACATCAAACT 
    AATAGTTTTC TTGTTAAAAA CTATTAATAT CTTCAAAAGC ACTTACCTCA 
    ATATCGTTTT TGTAATCGAT AAGAGTTTGT AAAGGCACAA TCTCATAGTC 
    TTCATGCATA TATAACATAA AAAGTTTAGT TATGAATTTT ATGAATTGTA 
    ACATGCATGT ATAGAAGTGA ATGAGGTATT TATTCCATTC TTCTTATTAG 
    CTTTATCATA TACAGTATTC CAAATAAAAT CAGAAATGAA AATCAAAATC 
    GAATCCAACA GTTGTTCGAA TT

AT2G20800.1

Model type
Protein coding
Short Description
NAD(P)H dehydrogenase B4
Computational Description
NAD(P)H dehydrogenase B4 (NDB4); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: extrinsic to mitochondrial inner membrane, mitochondrion, plastid; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B3 (TAIR:AT4G21490.1); Has 11460 Blast hits to 10815 proteins in 2238 species: Archae - 334; Bacteria - 8988; Metazoa - 48; Fungi - 603; Plants - 426; Viruses - 0; Other Eukaryotes - 1061 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20805.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT1G11510.1); Has 47 Blast hits to 47 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR