1. Home
  2. Mutant Lines
  3. 11-1241-1

11-1241-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Fruits (Siliques)::short)
stem (PO:0009047)
  • decreased length (PATO:0000574)
    (Branching::short internode)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 471975 [Map]; Strand: c
      • AT2G02000.1 - [+] show detail - glutamate decarboxylase 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1241-1 - 3-prime edge 
    GTTGCGGACA TAACGGGAAG CAAAAGTTGA ATGGATTGAA TCATCGGATT 
    TGGAATCTGT CTTAGATAAA ACCATCTTCT TGAAATGAGC TAAAGAAAAG 
    TAAAGGGAAA AATGTGCAAT GTTTTTGTTT TGTAGTTGAA TAATATGTGA 
    AATTAGAAGA AGAGGAGCAA ATGGTATATA TAGGGACGAG AATGGTTCTC 
    TTCGTTTTGT TTGCAACGTG AAAAAGGGGA AAGCCATTCC GCCTTGGGTT 
    TAAAAGGATT TCCTTTTTTA NAACCCTTTT TAACCTATTC ATTTAANTTT 
    AAAAAAAAGG TAAANAAATT TTNGGGCCNC CTTTTAAAAA AAAAAAAANN 
    NGGAAANAAA NTTTNGGGNC CCNCCCNTTA AAAAAANNTT AATNTTTNTN 
    AAAAAAAAAA AANNNTTTTT NTTTTTTNGG NNGGNGGNNG GGNGGGGGGN 
    NCTNTTTTNC CCCCCCCNTT NTTCACCNTN CNNNCCCNTC TTTTTTTTTT 
    TTTTNNAANA AAAANGCNCN ANCNCCCCCC CCCCCCCTNC NNNCNCNCCN 
    CCNNNNC

AT2G02000.1

Model type
Protein coding
Short Description
glutamate decarboxylase 3
Computational Description
glutamate decarboxylase 3 (GAD3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 4 (TAIR:AT2G02010.1); Has 2817 Blast hits to 2814 proteins in 863 species: Archae - 192; Bacteria - 1666; Metazoa - 146; Fungi - 354; Plants - 282; Viruses - 7; Other Eukaryotes - 170 (source: NCBI BLink).
Link
InterPro Scan - TAIR