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11-1268-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10904471 [Map]; Strand: w
      • AT1G30740.1 - [+] show detail - FAD-binding Berberine family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1268-1 - 5-prime edge 
    TGGNATCCCA AGGANTATGA TGANCTNNTT ANNNNNGTTG GNTATCNANN 
    NTGGCNTGAA NGATTATACG TCNANNTTGG CNTTCGNAGA GGNATGAACC 
    TAATGAGNAG GAACTANNAT NNCGAGANTG TTTGATCANA TTGGNTCCGT 
    GTTAAAACTG GCTTGTTAGA TCCGGATAAT TTCTTTAGAA ATGAGCAGAG 
    TATACCAACT TTACCTCCTA ATAGAAGATA GATAACTTTT AGTCCATGTA 
    ACAATAGTAA CTTCCTTATA GTGTTTTTTT ATGAAACTTG GAATATTTTT 
    TAATAGATTT AGCTGCAAGC TATATTGTGG CATATATAGC ACACGTTTTG 
    AAAAATACCA TCCTTTCTAA GTTCTAATTT TCTATATCAT ATGTTGGTTT 
    TAGTTTGCTT CATAATACAC TCCATGATTC CATATATCGG AAAAGAGAAA 
    AACCAAATTA GACTGAACCG GAACTGGAGT TAAAACCGGA TCTAACACTC 
    AGCNAATAAC AAAAAGANGA AGANTAACAT TTCAGTAATT ATACATACAT 
    ACACACTCGT AAACTAGAAC CCAAGACAGA ACAATNNGAA AANGTTATGG 
    AACAAATATA ATGAAAATTT ATACNTNGAT GAAACTCCAT AGGGATGNTG 
    TANGGTTCAG TTCCTGTCAG NNACCGTGNC AAGCAAGGGA AAAAGACCAN 
    TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10904411 [Map]; Strand: w
      • AT1G30740.1 - [+] show detail - FAD-binding Berberine family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1268-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATCAACTCAG TCATAATATT ATAAGTCGTT CTTAAATTAC CAATGTAAAG 
    TCTTTCCGCT TCCGGTCCAG CATCGGGCCA AGTCACCGAA TGCTGGATCT 
    TATATAGTTT GTGCCGATGC GGAAACGCCG TTGCATTCAC TGCGGTCACG 
    TTTAAACTCC CTCCATACGG ATTCAAAACC AAACCGGTTC TATCTAACGT 
    CGCCAATTTC TGAAACAACC GGTTTAATTC TGGTTTGGTC ATCTCTTTCT 
    CTACGTAATC TGATTTTCTC TTGAGAAATT TAGCCGAATC CGGTTCTCTC 
    TCGAGTAATA TCTCCGGTTT GACTTTGTCC ACGTCTACAT GATTCACCCA 
    CCATAAGAGT GATTGGATC

AT1G30740.1

Model type
Protein coding
Short Description
FAD-binding Berberine family protein
Computational Description
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G11770.1); Has 4744 Blast hits to 4529 proteins in 741 species: Archae - 32; Bacteria - 2167; Metazoa - 1; Fungi - 1713; Plants - 697; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR