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11-1275-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8151642 [Map]; Strand: c
      • AT2G18820.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-1275-1 - 5-prime edge 
    CACCACACCT TGGAGGCAAC CATGGATATT CAAACTCGAC ACAGAACTCT 
    TCTCCCTTAA TGTTGAAAAA ATAGGTTTTT GGTAGCGGTT TTGATAAATC 
    CACATCAACA AAAAATTTTG CTTCCTCGAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8151758 [Map]; Strand: c
      • AT2G18820.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-1275-1 - 3-prime edge 
    GTGTGGTGTC TGTGGGAAGT GGGGTCACCC TGAAAATGGT TGTTTGGCTA 
    GCTTGGGTAC AACAAAGGTT TTTACGGGTC CTCTGTTTTG CTCAGAACAG 
    GTAATTGTTA AATCAACATC GGCCCAAGTG TTTCTCTACC GGTTGCAGTG 
    GCNGGTGGGT AATGACCTTG TGGAGTCTGT ACCGTTGGTT GATTCTCAAG 
    CT

AT2G18820.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 2.7e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR