1. Home
  2. Mutant Lines
  3. 11-1286-1

11-1286-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20046247 [Map]; Strand: c
      • AT5G49430.1 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
        Distance: -793; Region: promoter
      • AT5G49435.1 - [+] show detail - pre-tRNA
        Distance: -576; Region: promoter
    Flanking Genome Sequence: 11-1286-1 - 5-prime edge 
    AGAGGAACTG ATGCTGGCAT TGTGCATGTG CTTTGTTCAA TCCTGATTCT 
    GTATTGAAAT GTTTTGATTT AATTTGCAGT TTGGATTCTT TGGTGATTAG 
    AGATGGGGCA ATTCTAATTT AGGGTTTTTG TTTTTTTGAT TGTTGCAGAG 
    ACAATGTGTT ATGGTTTTGG ACTTCTTTCG AAACAATCGT TTGCTCTGTG 
    ATCGTAGTTC TCCTTAGCTC ACGCGGCATC ACCGAGGTAC ACCTTCCTAA 
    GATCTCTTAT TTTATTTGAA AGTTAATTAG AATGTTTTGT ACTGTTGTTC 
    GTGGAATGTT TTGGCATGTA TATGTATGTG TTGTGGGTTT AGGATATTTT 
    AGTTAACTTT TGAAGTGTAT TCAATGGAGT TCTTAATCTT GGTTACTTGA 
    GTTATGTAGT TTTAAGTTCC CTTCTGGNGC TANAAATTAT CCTTGTAATT 
    GTCAAANATT GNATTTCTTA ACATTANTGT AAGGATGGAG TTACTGGTTT 
    AANNTANNAN NCCGGGGCCN GNNNNCNCCC CCCNNCCCNN NA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20046363 [Map]; Strand: c
      • AT5G49430.1 - [+] show detail - WD40/YVTN repeat-like-containing domain;Bromodomain
        Distance: -909; Region: promoter
      • AT5G49435.1 - [+] show detail - pre-tRNA
        Distance: -460; Region: promoter
    Flanking Genome Sequence: 11-1286-1 - 3-prime edge 
    GTTCCTCTAT ACAATAAAAA AAAAANTCCC ANTTAAAAAG ANAAAACTTT 
    NTCNANCCTT TNGAAGTNTT NTTTGTTTAA AAAAAAGNGG GGGNTANANA 
    GTCGTCAAAN CCTTTAANGC TACCANCCCG GGCCGNNNAC CNCCCGNGCC 
    CTNTNGGGNG NGGTTTTNCC CCGCCCGGNN NGNNTNANNN CCCGNTTNCC 
    GNTTTTNTCC CGTTNTNNNN CTTGGGGGGG GNNGTNNTTG CTGGGGGGAC 
    NACNCGNGCC CTANAANCNN NNGNNNTTTN GNTCNNGNCT GANAGNNNCC 
    NNNCCGGGNN GGGGNCANCC CCCNCCCCCN GNGNG

AT5G49430.1

Model type
Protein coding
Short Description
WD40/YVTN repeat-like-containing domain;Bromodomain
Computational Description
WD40/YVTN repeat-like-containing domain;Bromodomain; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Bromodomain (InterPro:IPR001487), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD40/YVTN repeat-like-containing domain;Bromodomain (TAIR:AT2G47410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49435.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-His (anticodon: GTG)
Link
InterPro Scan - TAIR