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Mutant Lines
11-1288-1

11-1288-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 17861071 [Map]; Strand: c
- AT5G44340.1 - [+] show detail - tubulin beta chain 4
  Distance: 0; Region: exon1 (5UTR)

GTAAACTATA TATAGCTGAT TATTACCTAT TCAACAAATC CCTCTTTTTA 
AACCTATTCA AAGCCAAGGA CAAGAAAAAA AAAANAGTCN CCCATTTTCT 
TCNNATTTTT TTTTGGCNTT GGCCAAAAAA CCCAAAAAAA AAAAAANGGN 
NNNAANCCNT TTTTTNCNGG GGGGGNANGG GGGNANNCNA ANGGGGNNAA 
ANTTTGGGGN NNGGNNTNGG NAAAAANCCG GGNTTNNNNN CCCCGGGNAA 
AACNGGGGGN ANTTNCCCNT NNCCNNNGNA NNNTTTNGGN NTTTTTTNAA 
AAAAACNNGG GGGGGNNAAN NCCCCCCCCC CCCCCNTTTT TNGGGNTNGG 
GNCCNGGGCC CCGGGGTTNT NNNAAANNGG GGNCNGGGGG GNAAANTTTC 
CCNCCNNNAA ANNNCNNTTT NGGGNAANNG GGGGNNGGAA ANNANGGGGG 
NAAGGGGGTT TNCCCCCNGG GGGGNGNGGN ANANTAATTN TNNCCCNAAN 
NNNGGGGGNN NAGNNCTNAA AANNCCAAAN NGNNTTCNGG GGGGGGAAAA 
ANTTTTTNNA ANGGGGGCNN NGNNTTNTAN ANNGGGGCCN NAAANNNNNA 
AAAAANNNNN NNGGGGGNTT GGGGAAANNG CNCTTNNNNG GGGGGNGGGG 
GTTNNTGGGG NGGGANAAGG GGGNCCNCGG GG

3 prime edge [+] show sequence

Chromosome: 5; Position: 17861194 [Map]; Strand: c
- AT5G44340.1 - [+] show detail - tubulin beta chain 4
  Distance: -93; Region: promoter
- AT5G44345.1 - [+] show detail - F-box associated ubiquitination effector family protein
  Distance: -919; Region: promoter

CGTCTTCTTC AATAAGTTTT CTAAAATAGT TATTTTCAAA TTGGTCCTTA 
TAGTTTGTTT TATCTTGTAC ATTGTAACAT GATAGTTTTA GATAATTTGT 
TTTTGTACTC TGCGCTGTAT GACAGCGGAG GATTTCAAAA TATATCTTGT 
ACTTGTCCCA CTTGTCTTGA AGATATTTTT ACTATTTAAG TTTATTTTTA 
ATAACAAGAG TAGAATAATC ATATTCGGTA ATAGTACAAA GAAAATTAGT 
TTTTTTTGCC GTTTATAGAA ATTATAACAT AATGACAAAT TACATTATTT 
TTGAAAATTG AAAATTTATT GAAGGGAGAG ATTCATTCTA GTTAATTTGA 
ATAGTATTCG ACTCAGGATC TGCTAAACCG GTTTTGGATA CAACGATTAT 
GCATAATTAA ACAAGTTTTG ACTACAGAGA TCATATAGTT GGGCCCTCTC 
GATAGTTGAA AAAGGCCCAT TACTTTTAGT ATANCAAAAC AAATATTATG 
AAGCGTCCCT AAATGATCTA ATACACACAT TAAAATTTTC AAAAATGTTT 
NATCACACTC TCCTTCACTG ATTTGTTCTC AGGGGCGGTC CCTACTAAGG 
CNGGAACAAA CACAAGTNGG GACCTCTCAA TAATTTAAAA NAGGCCCAAN 
CATTTTCCGN CAAGAATGGA TCTTAATTAA NTTAANNCCC TCCNCCTTC

AT5G44340.1

Model type: Protein coding
Short Description: tubulin beta chain 4
Curator Summary: beta tubulin gene
Computational Description: tubulin beta chain 4 (TUB4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, protein polymerization, microtubule-based movement; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-9 chain (TAIR:AT4G20890.1); Has 23619 Blast hits to 23523 proteins in 4869 species: Archae - 36; Bacteria - 51; Metazoa - 4471; Fungi - 14157; Plants - 1545; Viruses - 0; Other Eukaryotes - 3359 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G44345.1

Model type: Protein coding
Short Description: F-box associated ubiquitination effector family protein
Computational Description: F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR