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11-1289-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16775126 [Map]; Strand: w
      • AT5G41900.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 3430; Region: intergenic
      • AT5G41905.1 - [+] show detail - MIR166/MIR166E; miRNA
        Distance: 398; Region: intergenic
    Flanking Genome Sequence: 11-1289-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAT CTTGAATTAC GTTTTAACTA GTTTTTCTGT
    GATTTTGAGC ATAATATACA TCAAAACTCG GTTTGCTAAG TTTATGAATA
    TTTGTTCTCC GTACATATAC ATGATACACA AAGTAAGAAT CTGCTCTTGT
    TTTCTTCTAG CTATAAAATT AATTCCGAAG TCAACTATCA ACCTCAAACT
    TGTGTAATTA ACCTATGCAA CCAATTCATC ACTTGAGATT AAAAAAGTTC
    GTAGCAAAAC CAAACAAAGT AATCCATTAC CATCCATAGA AATTGAAGTT
    GCTTGAACTT CAAAGAAACA AAGCTAAACC AATTACCACA AAAAGAGAAG
    ATGAATGAAA CCAAATCTAA CCTGGAGATA GTTTACTCAA AGAAGGAAAG
    ATCGAAGCGA TATAATTGAG GGGAATGAAG CCTGGTCCGA CGTCATTAAC
    CGTAAAATGA TCATTCATGT ATAGACTAAT GAATAAAGAA GAGACATATA
    TATAATCAAA TATAGATCTA AGTTAAGGGC CTCGTGCCAG ACAACATTCC
    CCTCAAAAGG AAAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16775094 [Map]; Strand: w
      • AT5G41900.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 3398; Region: intergenic
      • AT5G41905.1 - [+] show detail - MIR166/MIR166E; miRNA
        Distance: 430; Region: intergenic
    Flanking Genome Sequence: 11-1289-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATA 
    TTTGTCAGCT TTTTCGTAAA TATATTATTA AATTATTTTA TTTTTGGTTG
    TTTCTTGTTT CATTTCCTTA TATATTTACT TATCTATTGT TTCAAAAAAC
    CTGAATTTAT GTAAGTGGAA AGAATTAGAA GAATAAAGAA GGACAAGTGG
    AATGGGATAA GAGAAGCAGA TGCTTGCAGG AAAAAAAAAA AAAAAAAAAA
    AAACCCCNCC CCTTNNTTTN GGGGNNCCCN CCNAAAAAAN CCCTTTNAAA
    AAANTTNGGG NAANTNCCCC CCCNGGCCCG NNCCCCCCCC NNCCCNTNNA
    NNGNA

AT5G41900.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G64670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41905.1

Model type
miRNA
Short Description
MIR166/MIR166E; miRNA
Curator Summary
Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUUCCCC
Link
InterPro Scan - TAIR