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11-1290-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 434918 [Map]; Strand: w
      • AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 11-1290-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA GGAGACCAAG CAAACCTGAA AGTATGTTGA 
    AGCTGTTTGC TATGTAGTCG TCTGAACTGT GAAGCAACAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 434866 [Map]; Strand: w
      • AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 11-1290-1 - 3-prime edge 
    CTTTTGACTG ATCTCTCTGC TTCTCCAATC TCCGGTTCTG TTTGGTTTAA 
    TTCGGTTTAA CTGTCAGGTT TTATTCGGTT CAATGGAGAA CTTGGGGTGC 
    GTCTTTCATA CAAGCGGCGT GGCGGAGACA TTGCCGGAGG AAACTAGCTA 
    GATCATTAAC CGAAGAAGAA GATAGATTCC GAAACGCGAT CGCAAAACGC 
    GAACGCGATG CGGCGTCTTC GTCTAGCCTG GTTGCAACGT TATACGCGTC 
    GCGGTTTGCT TCAAACGCGC TTCGCAATCT CCGTACAAAC AACCTTCCTT 
    TGCTACCTCC TAAACCCTCC GAGCCTGATT TCAGTCTCCG AAACCCTTAA 
    AATATCTCTT ACACATGTCC ACTTACCACT TGTATAATAT TGTGTCAACG 
    ACATTAAAGC T

AT4G01010.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 13
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR