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11-1307-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1554724 [Map]; Strand: c
      • AT3G05410.1 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-1307-1 - 5-prime edge 
    GTTTCAGAGA CATTTCTCGT CTCTGTTCGT TAAGTGAGGT CGCTGAGTGT 
    TGCCGTCGAC TCTCTTATCA CCTCGAGAGG GAGATTATAC GACAACGTTT 
    TAATACAATT ACCAACGGTG GCGTTTAGAA CAACAGCCGA ACGGCAGCGT 
    TTAAAGAGAA TCGCTCTCCC AAAAATATGA ATTGCTTTTC AGTACTTCAC 
    TATCCTTTAA TTTACTTAGA GACCCTTAAT CATTAATACT TTTCAGTACT 
    TCACTAAACT TAACATGTAT ACACTTCAAC CCAATTTTTT TATATTTAGA 
    TAAGTTATAT ATTATGTATC AATATGTTTG TGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1554840 [Map]; Strand: c
      • AT3G05410.1 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1307-1 - 3-prime edge 
    TNTGAANCCT TNTATCTCTC TACTNTACTN ATTNGNGACT AATGTAAAAC 
    TTTACCANCT TCNTAATCGC TNANCAACCC TGCNGTGACC TGAAANCTAC 
    CCCTGGCCGA GGAGTTTTCT CCACTGGTTG AGAAATTCAA CCGACGGCTT 
    CTTCTGGGTG TAGGATCGTC CTCTGTTCTT GCGATTGGTG CGAATTTCGG 
    AGGAACCACG AGTTTTATAC TCGGTTTATC GCCAGGGATA GGCCGGAATC 
    TAAAACTCGA CGTCATTTAT CCGATTGGAG GATATAGCAG ATGTATCGAT 
    ACGGTTGAAG GATTCGGTTA GTAAGTCATC GAATTTCTCC GGTTTAAGAT 
    ATTAGCAATT GGAAGATAAA TCAAATGATT GTCAATTTTG TAATCACAGA 
    ATTTATATAT CCGGCTACGT GGGTTGGAGA CCAGACGCTT TTGTATAGAG 
    CGGCGGAGAA GTCAGAACGG GAGAATT

AT3G05410.1

Model type
Protein coding
Short Description
Photosystem II reaction center PsbP family protein
Computational Description
Photosystem II reaction center PsbP family protein; Has 43 Blast hits to 43 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05410.2

Model type
Protein coding
Short Description
Photosystem II reaction center PsbP family protein
Computational Description
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 355 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR