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11-1308-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17678577 [Map]; Strand: c
      • AT2G42460.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G42460.2 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-1308-1 - 5-prime edge 
    GAGAACAACA CTCTCTTCAT TGAAGTCTAC ATTAAAGTTA CCGAAGTTGT 
    TCATGAAGGG GATGAAACAA GGAAGGATAT GTTAGATTTC AAAGGTTTCA 
    ATGTTCTTTC TTCTCAAGTA AGTTAAGAAT CGCTGATGTG TTTTAGTAGA 
    TACAACCTGA GTTTGGATTT GGTTCACATA ATTATATATT TCTTGTTGCT 
    GGCAGATTGC TTCGGTGAGC CCGATATTCG CTAAGTACCC AAAATTTGCG 
    GATGATATCA AACCAACAAG CAAAGCGGTG AAGACAGTAT ACCTGAAGAT 
    TCTCCTCGGC CTTATCAAGA CAGTAAACAA GCCTCCAGAG ATCTTTTCAG 
    AGACTGAACT AATCAAGGCT TATAGCAGCT TAATTGATCT AATGGAAGTG 
    GGCTTTAGGG TGAAGTGGTT GAAGTCAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17678693 [Map]; Strand: c
      • AT2G42460.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G42460.2 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-1308-1 - 3-prime edge 
    TTGTTCTCCA ACAACTCTCT ATCTTGTAAC TTGGTAAGAG GCAACGCCGT 
    TCGAAAACCC CAGCCAGGGA TCTCAGGACC AAACAAGCCA TATCTTTCTG 
    CATGCAAGAC AATCAAAATA TAAATTTTAA GCT

AT2G42460.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42470.1); Has 882 Blast hits to 581 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 47; Plants - 810; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42460.2

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42470.1).
Link
InterPro Scan - TAIR