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11-1319-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15536453 [Map]; Strand: w
      • AT2G36985.1 - [+] show detail - DVL family protein
        Distance: -1261; Region: intergenic
      • AT2G36990.1 - [+] show detail - RNApolymerase sigma-subunit F
        Distance: 805; Region: intergenic
    Flanking Genome Sequence: 11-1319-1 - 3-prime edge
    AAAACGTGTA AAAAGGTAGG GGTCGTACGA ATCTAATAAA TTGCAAAGAA 
    GAAGACATTT CAGAAGTGGG GGCTCGGCTT ACACGGACAA CCACTCACGT
    TCAGGTGCAT GCCAATGCGG CAATGCCTTA CCATTAATAA GTATAGCTCA
    ATATTGAATT TTATACAATG TTAGAGGTCG ACCAAAATCC AAAATAAATG
    TTGAATTTTA ATCGACTGTG GATCACCAAT CACCATGTTT TGTTTTTTTC
    CCTTGCGACA TAACATAACA CNTGTAAGTC TTCCTTTTTT CAATAGTGTC
    AGTTGTTTGA TTTTTTTTTC CTCANAGTGA TACATATATG GTTTGCTTTG
    CATAGTAAAT ATACTATTTG ATGAGTNGTT TTCTCTTTTT TTNGTTNGNC
    ATATATGTGA TNAGTTTTTT TTTTNGGGGG GNAAAANCNA ANTTNNCANT
    TTNGTTTTNN CCCNANNGTA ANCTTTTTTT TTTTTTTTTN NANTTTTTTN
    CANCTTTTNA GGGGNGNANT TTTTNTNNAA NCTTTCCCNC NNNNAAAANT
    TTTTNTAGGG GAAANTTNTT TTTNNNTNGG GNAAANNNAN AANCCGGGGN
    NGNAAANCCC NNNCNNTTAA

AT2G36985.1

Model type
Protein coding
Short Description
DVL family protein
Curator Summary
Encodes ROTUNDIFOLIA4, a member of the seed plant-specific family of small peptides, RTFL (ROT FOUR LIKE), characterised by the presence of a 29-amino acid domain: RTF. Expressed in shoot apices, young leaves and flowers. Involved in controlling polarity-dependent cell proliferation.
Computational Description
ROTUNDIFOLIA4 (ROT4); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 1 (TAIR:AT3G53232.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G36990.1

Model type
Protein coding
Short Description
RNApolymerase sigma-subunit F
Curator Summary
Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. It is a substrate for regulatory phosphorylation by cpCK2, a nuclear-coded plastid-targeted casein kinase 2, that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation.
Computational Description
RNApolymerase sigma-subunit F (SIGF); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23918 Blast hits to 23899 proteins in 2801 species: Archae - 0; Bacteria - 17084; Metazoa - 1; Fungi - 2; Plants - 241; Viruses - 15; Other Eukaryotes - 6575 (source: NCBI BLink).
Link
InterPro Scan - TAIR